| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is frsA
Identifier: 161486650
GI number: 161486650
Start: 861257
End: 862504
Strand: Direct
Name: frsA
Synonym: VV0856
Alternate gene names: 161486650
Gene position: 861257-862504 (Clockwise)
Preceding gene: 37679039
Following gene: 37679041
Centisome position: 25.67
GC content: 46.55
Gene sequence:
>1248_bases ATGTCAGAAGAAGTCAGCAAAAACCTGTCAGAAACGCTATTTGTCAAACATAAGCAAGCCAAAGAAACCTCGGCATTGAC TCAATACATGCCGACCAGCCAATCCTTACTTGATGAAATTAAAGAGAAGAATGGTTTTTCTTGGTATCGCAACCTTCGTC GCTTGCAATGGGTGTGGCAAGGTGTCGATCCTATTGAGCAAGAACAAGTATTGGCTCGTATTGCCTCTTCCAAACATTCA CGCACTGATGAGCAATGGCTCGATACGGTGATGGGATATCACAGTGGTAACTGGGCTTATGAATGGACGAGGCTCGGTAT GGAGCATCAAAAGCGTGCCGGTGAGATGACGAATGAAGCAGCATCGGAAGCGCTCTTCTCCGCATCCTTGTGTTACAGCA TCGCAGGTTACCCACACCTCAAGAGCGATAATTTGGCCATTCAAGCCCAAGTATTGGCCAACAGCGCTTACCTTGAAGCC GCGAAAAAAAGCAAATACATCATTAAGCAGCTCGAGATCCCATTTGAGAAAGGGAAGATCACCGCGCACTTGCATCTGAC CAATACGGACAAACCGCATCCTGTGGTTATTGTGAGTGCGGGATTAGACAGTCTGCAAACCGACATGTGGCGTCTATTTC GAGATCACCTTGCCAAGCACGATATTGCCATGTTGACAGTAGACATGCCATCGGTGGGGTACAGCTCAAAATACCCATTA ACGGAGGATTACAGTCGCCTTCACCAAGCGGTGTTGAACGAGCTTTTCTCTATTCCTTATGTCGATCATCATAGAGTGGG TTTGATCGGCTTTCGTTTTGGCGGTAACGCCATGGTGAGGCTCTCGTTTCTTGAGCAAGAAAAGATCAAAGCGTGCGTCA TCTTAGGCGCGCCTATTCATGATATTTTTGCCTCCCCACAGAAATTGCAGCAAATGCCGAAGATGTATCTCGATGTCTTA GCCTCGCGTTTAGGTAAGAGTGTGGTGGATATTTACAGCTTATCGGGGCAAATGGCCGCGTGGTCACTGAAAGTACAAGG CTTTTTGAGCAGTCGTAAAACCAAGGTGCCTATCTTGGCGATGAGCTTAGAAGGGGATCCGGTCTCGCCATATTCGGATA ATCAGATGGTTGCGTTTTTTAGCACTTATGGAAAAGCGAAGAAAATCAGTTCCAAAACAATTACACAAGGATATGAGCAA TCCCTCGATTTAGCGATAAAGTGGCTGGAAGATGAACTCTTAAGGTGA
Upstream 100 bases:
>100_bases GATTTGGCTTTTAGGCGCACACACTCTTGCATGGAAAGAGTATTAAGCCACTAAGCCGTATTTGTTTTTAGTCTTTTGGA ATGTCACTCTGAGCCCGAAT
Downstream 100 bases:
>100_bases CAAATCTCCTAATTTAGTCAAGAGTGATATATGAGACTTAAAATTTAAGCTCATGATAAATAAAAATTATTGTCATTCTT AACATTGAAGAAAATGGAGA
Product: fermentation/respiration switch protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHS RTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEA AKKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVL ASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQ SLDLAIKWLEDELLR
Sequences:
>Translated_415_residues MSEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHS RTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEA AKKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVL ASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQ SLDLAIKWLEDELLR >Mature_414_residues SEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHSR TDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAA KKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLT EDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLA SRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQS LDLAIKWLEDELLR
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0255 family
Homologues:
Organism=Escherichia coli, GI1786434, Length=414, Percent_Identity=42.512077294686, Blast_Score=320, Evalue=2e-88,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y328_VIBVU (Q8DF91)
Other databases:
- EMBL: AE016795 - RefSeq: NP_759330.1 - ProteinModelPortal: Q8DF91 - GeneID: 1177289 - GenomeReviews: AE016795_GR - KEGG: vvu:VV1_0328 - HOGENOM: HBG297988 - OMA: GANIAVR - ProtClustDB: PRK05077 - BioCyc: VVUL216895:VV1_0328-MONOMER - HAMAP: MF_01063 - InterPro: IPR010520
Pfam domain/function: PF06500 DUF1100
EC number: NA
Molecular weight: Translated: 47013; Mature: 46882
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC GVDPIEQEQVLARIASSKHSRTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEA CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEHHHHHCHHHHHHHHHHHHHH ASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAAKKSKYIIKQLEIPFEKGKI HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEE TAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL EEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIH HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHCCCEEEEECCCHH DIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILA HHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCCCEEE MSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQSLDLAIKWLEDELLR EEECCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC GVDPIEQEQVLARIASSKHSRTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEA CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEHHHHHCHHHHHHHHHHHHHH ASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAAKKSKYIIKQLEIPFEKGKI HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEE TAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL EEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIH HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHCCCEEEEECCCHH DIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILA HHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCCCEEE MSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQSLDLAIKWLEDELLR EEECCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA