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The map label for this gene is dapB [H]

Identifier: 37678807

GI number: 37678807

Start: 610649

End: 611458

Strand: Direct

Name: dapB [H]

Synonym: VV0623

Alternate gene names: 37678807

Gene position: 610649-611458 (Clockwise)

Preceding gene: 37678806

Following gene: 37678808

Centisome position: 18.2

GC content: 48.64

Gene sequence:

>810_bases
ATGGTAAGAATTGCAGTGGCAGGAGCGGCGGGTCGTATGGGTCGCAATTTGGTTAAAGCAGCACATCACAATCCCGCAGC
CAAGGTTGCTGCTGGCTCAGAGCGTCCAGAATCATCACTGGTTGGTGTCGATCTTGGTGAACTATGCGGTGAATGTAAAT
TTGACGTTGTGGTTTGCGATGATTTAGCCAAACAGATTGATCAATTTGACGTAATTATTGACTTTACCGCTCCAGCAAGC
ACCTTGAACAATTTGGCGCTTTGCCAACAATATGGCAAGAGTATTGTTATTGGTACTACTGGCTTTACCGAAGAGCAACG
TGAGCAGATCGATCTGGTCGCGCAACAGGTACCTGTGGTCATGGCGCCAAATTACTCTGTGGGCGTGAATCTTGTTTTCA
AGCTGCTTGAAAAAGCGGCTAAAGTGATGGGCGACTACTGTGACATCGAAATTGTGGAAGCGCATCACCGCCACAAAGTG
GATGCTCCATCGGGTACAGCTATTGGTATGGGCGAAGCGATTGCAGGTGCCATGGGTAATAAACTCAGTGATGTTGCCGT
CTATGCTCGTGAAGGGATCACTGGAGAGCGAACCAAGGACGAAATTGGTTTCGCGACCATTCGAGCGGGGGATATTGTTG
GCGAGCATACCGCGATGTTTGCTGATATTGGTGAGCGTGTAGAAATTACCCACAAAGCAACAGACCGTATGACTTTTGCT
AATGGTGCCGTCAAAGCCGCAGTGTGGCTGCACGAAAAACCTGCCGGGTTTTATACCATGACAGATGTCCTTGGTCTTAA
CGACCTGTAA

Upstream 100 bases:

>100_bases
TTGCTTGAGATCTGGTCTCGCTTTGCAATAGTTGATAGTTTAAGAACCTATTTGATCGATTTGCCCGTTTGGCAGATCCA
GAAACACGGAGAAAAATGCA

Downstream 100 bases:

>100_bases
ATAAATAATTATGCGCCAGCCAATGCTGGCGCTTCTTTTATATGCTCTACTTTTCCTTAAAGTTTGCTCAAAGTTCTTCT
CTTCTTAGCGTTAAGTTAAT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MVRIAVAGAAGRMGRNLVKAAHHNPAAKVAAGSERPESSLVGVDLGELCGECKFDVVVCDDLAKQIDQFDVIIDFTAPAS
TLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVVMAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKV
DAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA
NGAVKAAVWLHEKPAGFYTMTDVLGLNDL

Sequences:

>Translated_269_residues
MVRIAVAGAAGRMGRNLVKAAHHNPAAKVAAGSERPESSLVGVDLGELCGECKFDVVVCDDLAKQIDQFDVIIDFTAPAS
TLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVVMAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKV
DAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA
NGAVKAAVWLHEKPAGFYTMTDVLGLNDL
>Mature_269_residues
MVRIAVAGAAGRMGRNLVKAAHHNPAAKVAAGSERPESSLVGVDLGELCGECKFDVVVCDDLAKQIDQFDVIIDFTAPAS
TLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVVMAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKV
DAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA
NGAVKAAVWLHEKPAGFYTMTDVLGLNDL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=268, Percent_Identity=62.3134328358209, Blast_Score=327, Evalue=4e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28657; Mature: 28657

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRIAVAGAAGRMGRNLVKAAHHNPAAKVAAGSERPESSLVGVDLGELCGECKFDVVVCD
CEEEEEECCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEECCCHHHHCCCCEEEEEEHH
DLAKQIDQFDVIIDFTAPASTLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVV
HHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCEE
MAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKVDAPSGTAIGMGEAIAGAMGN
ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHCCCCCCCCCCEECCHHHHHHHHCC
KLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA
CHHHHHHHHHCCCCCCCCCHHCCEEEEEECCCCCHHHHHHHHCCCEEEEEEHHCCCEEEC
NGAVKAAVWLHEKPAGFYTMTDVLGLNDL
CCCEEEEEEEECCCCCCEEHHHHHCCCCC
>Mature Secondary Structure
MVRIAVAGAAGRMGRNLVKAAHHNPAAKVAAGSERPESSLVGVDLGELCGECKFDVVVCD
CEEEEEECCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEECCCHHHHCCCCEEEEEEHH
DLAKQIDQFDVIIDFTAPASTLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVV
HHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCEE
MAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKVDAPSGTAIGMGEAIAGAMGN
ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHCCCCCCCCCCEECCHHHHHHHHCC
KLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA
CHHHHHHHHHCCCCCCCCCHHCCEEEEEECCCCCHHHHHHHHCCCEEEEEEHHCCCEEEC
NGAVKAAVWLHEKPAGFYTMTDVLGLNDL
CCCEEEEEEEECCCCCCEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA