| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is catD [H]
Identifier: 37678750
GI number: 37678750
Start: 548406
End: 549224
Strand: Direct
Name: catD [H]
Synonym: VV0566
Alternate gene names: 37678750
Gene position: 548406-549224 (Clockwise)
Preceding gene: 37678749
Following gene: 37678752
Centisome position: 16.35
GC content: 47.99
Gene sequence:
>819_bases ATGAAAACATTCGTCATAGATGACAAAAGCATGGCTTATCAAGATGTGGGTCAAGGTCCGGTCTTGTTATTTGGTCATAG CTATTTGTGGGATAGCCAGATGTGGGCGCCACAAATTGAATTTTTAAGTCAGTCTTATCGTTGTATTGTGCCGGATTTAT GGGCGCATGGGGAATCTGAGTCTGCACCAACTCGCTGCAACTCATTGGTGGATTACGCTCAACACCTGCTCGCGTTGATG GATCATCTACAAATTGAGACGTTTTCTATTGTCGGTTTATCCGTTGGTGGGATGTGGGGAGCAGAACTGGTTTCACAAGC ACCAGCACGAGTGACTTCTTTAGTCATGATGGACACCTTCATTGGTCTAGAGCCAGAAGTGACCCATCAGAAATACTTCG CCATGTTGGATGCCATCGCGCAAAGCCAAATGGTGCCAGCACCGATTGTGGAAGCGGTGGTGCCGCTGTTTTTTGCCAAC GATACGAAAGAGCAAAAACCGCAATTGGTTTCGGATTTCGAACAACGCTTAGCGTCACTTTCCGGTGAACGTGCGGTGGA AGTGGCGAGAGTTGGACGTATGGTGTTTGGTCGTCGCGATGTGATTGAGGATGCGGAAAAATTTGCTTTGCCAACCTTGA TCGCCGTTGGTCAGCAGGACAAACCTCGGCCAGTGTTTGAATCTTACTTGATGCACGATGTGATCACCGGCAGTCAATTG GTGGAAATTCCTAACGCTGGCCACATCAGTAACTTAGAGCAGGTTGAGTTCGTTAACCAAATGCTTGAGACGTTTCTCGC GGCAGTTTACGCCCAGTAA
Upstream 100 bases:
>100_bases TTAGGCGGCCGTTTTTTTAATTTGCTGCTTTGTATTCAACATGGAACTGAATGGCATCTTGTGTTGCCTATGTTAGGTTC TGCTGATTTTAGGAAAAATA
Downstream 100 bases:
>100_bases GCGAACGAAAATGGCCTCATGAGAGGCCATTTTCTATTTCTTTGACGTTTATCGTCGTCTCGTATTTCGCTTGTCGTCTC TTATTTTGCTTACTGTGACT
Product: putative beta-ketoadipate enol-lactone hydrolase
Products: NA
Alternate protein names: 3-oxoadipate enol-lactonase II; Beta-ketoadipate enol-lactone hydrolase II; Enol-lactone hydrolase II [H]
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MKTFVIDDKSMAYQDVGQGPVLLFGHSYLWDSQMWAPQIEFLSQSYRCIVPDLWAHGESESAPTRCNSLVDYAQHLLALM DHLQIETFSIVGLSVGGMWGAELVSQAPARVTSLVMMDTFIGLEPEVTHQKYFAMLDAIAQSQMVPAPIVEAVVPLFFAN DTKEQKPQLVSDFEQRLASLSGERAVEVARVGRMVFGRRDVIEDAEKFALPTLIAVGQQDKPRPVFESYLMHDVITGSQL VEIPNAGHISNLEQVEFVNQMLETFLAAVYAQ
Sequences:
>Translated_272_residues MKTFVIDDKSMAYQDVGQGPVLLFGHSYLWDSQMWAPQIEFLSQSYRCIVPDLWAHGESESAPTRCNSLVDYAQHLLALM DHLQIETFSIVGLSVGGMWGAELVSQAPARVTSLVMMDTFIGLEPEVTHQKYFAMLDAIAQSQMVPAPIVEAVVPLFFAN DTKEQKPQLVSDFEQRLASLSGERAVEVARVGRMVFGRRDVIEDAEKFALPTLIAVGQQDKPRPVFESYLMHDVITGSQL VEIPNAGHISNLEQVEFVNQMLETFLAAVYAQ >Mature_272_residues MKTFVIDDKSMAYQDVGQGPVLLFGHSYLWDSQMWAPQIEFLSQSYRCIVPDLWAHGESESAPTRCNSLVDYAQHLLALM DHLQIETFSIVGLSVGGMWGAELVSQAPARVTSLVMMDTFIGLEPEVTHQKYFAMLDAIAQSQMVPAPIVEAVVPLFFAN DTKEQKPQLVSDFEQRLASLSGERAVEVARVGRMVFGRRDVIEDAEKFALPTLIAVGQQDKPRPVFESYLMHDVITGSQL VEIPNAGHISNLEQVEFVNQMLETFLAAVYAQ
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR012790 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.24 [H]
Molecular weight: Translated: 30325; Mature: 30325
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTFVIDDKSMAYQDVGQGPVLLFGHSYLWDSQMWAPQIEFLSQSYRCIVPDLWAHGESE CCEEEECCHHHHHHHCCCCCEEEEECCHHCCCCCCCHHHHHHCCCCCEECCHHHCCCCCC SAPTRCNSLVDYAQHLLALMDHLQIETFSIVGLSVGGMWGAELVSQAPARVTSLVMMDTF CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH IGLEPEVTHQKYFAMLDAIAQSQMVPAPIVEAVVPLFFANDTKEQKPQLVSDFEQRLASL HCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHC SGERAVEVARVGRMVFGRRDVIEDAEKFALPTLIAVGQQDKPRPVFESYLMHDVITGSQL CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCE VEIPNAGHISNLEQVEFVNQMLETFLAAVYAQ EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKTFVIDDKSMAYQDVGQGPVLLFGHSYLWDSQMWAPQIEFLSQSYRCIVPDLWAHGESE CCEEEECCHHHHHHHCCCCCEEEEECCHHCCCCCCCHHHHHHCCCCCEECCHHHCCCCCC SAPTRCNSLVDYAQHLLALMDHLQIETFSIVGLSVGGMWGAELVSQAPARVTSLVMMDTF CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH IGLEPEVTHQKYFAMLDAIAQSQMVPAPIVEAVVPLFFANDTKEQKPQLVSDFEQRLASL HCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHC SGERAVEVARVGRMVFGRRDVIEDAEKFALPTLIAVGQQDKPRPVFESYLMHDVITGSQL CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCE VEIPNAGHISNLEQVEFVNQMLETFLAAVYAQ EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8125318; 670169 [H]