| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is leuO
Identifier: 161486664
GI number: 161486664
Start: 477420
End: 478358
Strand: Direct
Name: leuO
Synonym: VV0493
Alternate gene names: 161486664
Gene position: 477420-478358 (Clockwise)
Preceding gene: 37678676
Following gene: 37678678
Centisome position: 14.23
GC content: 48.03
Gene sequence:
>939_bases ATGAGCGCGATTGCCAGCTATCGAATGGAAAGTACTTTACGCGGAGTGGATCTCAACCTACTGACGGTATTTGATGCCGT TATGCAAGAGCAAAATATTACTCGCGCAGCACATAATTTAGGCATGTCACAGCCTGCAGTGAGCAACGCGGTTGCTCGCT TAAAAGTGATGTTTAATGATGAGCTTTTCATGCGTCAAGGGCGTGGTATTCAACCGACCCAGCGTGCTCGCCAATTATTT GGCCCAGTCCGCCAAGCGCTGCAATTGATCCGCAATGAATTACCAAGTTCTGTATTCCAGCCTGAGTCTTCAACTCGTCT GTTCAAACTGGCGATTTGCAGCCCATGTGATATGCGTTTTGCACCACGCATTATGGCAGACATTCATAACAAAGCGCCTA ATGTACAATTGCATTTGGATGCAGAGTTTGATCGCATGCTCTCTGAGCGTATGCGCTATCAAGAAATCGACTTTGTGATT GATTACGCACGTTTTGACGAGCAAGGCTTCTCAAGCACAGAGATCTTCAAAGATGAACTCGTGGTTGTGACGTCTAAGCA GCATCCTCGTATTCAAGGTAAAGTGACAGAAGCGCAGTTGATGCAAGAGCGTCACGCGAAACTGTCTCGCATTCACGGCC AACGCAGCTTCTCTGAGCAAGCGTATCGCGATCTGGATGTGGCGGCGTATTTCGAAGGCACAAGCTTGAGCAACGTTCTG TATGTGGTTGGTCAATCTGAGCTTGTGACGATCGCTCCTCGCTGGATTGTGGAAAATGCGGCAAACAACGCGCAGCTACA GATTCTTGACTTCCCATTTGAAAATCGTGAAATCAGCGGTTTCTTAAGCTGGCACGAGTCATCAGAAAAAGACAAAGGCC ACATTTGGCTGCGTGATCTGCTGATGGTGACATGTGGCGAAGTGGTTGCTGCGGTATAA
Upstream 100 bases:
>100_bases ATAAATATAAGAAATACAGGTTATCTATTCCTGACTATCAAATTCAAATTTGTTGACCGTTACACGAGAGGCGCACTAGA TGTTAGATAAAAAAGATGCG
Downstream 100 bases:
>100_bases CCGACACGGCCTGTTACAAATTGGATGCCCTCATTGAGCCTTGGCCATGAGGGCATTTTTTTATCTTGTTATTGATGATT CTCTCTAATTGAGCATAAGT
Product: leucine transcriptional activator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MSAIASYRMESTLRGVDLNLLTVFDAVMQEQNITRAAHNLGMSQPAVSNAVARLKVMFNDELFMRQGRGIQPTQRARQLF GPVRQALQLIRNELPSSVFQPESSTRLFKLAICSPCDMRFAPRIMADIHNKAPNVQLHLDAEFDRMLSERMRYQEIDFVI DYARFDEQGFSSTEIFKDELVVVTSKQHPRIQGKVTEAQLMQERHAKLSRIHGQRSFSEQAYRDLDVAAYFEGTSLSNVL YVVGQSELVTIAPRWIVENAANNAQLQILDFPFENREISGFLSWHESSEKDKGHIWLRDLLMVTCGEVVAAV
Sequences:
>Translated_312_residues MSAIASYRMESTLRGVDLNLLTVFDAVMQEQNITRAAHNLGMSQPAVSNAVARLKVMFNDELFMRQGRGIQPTQRARQLF GPVRQALQLIRNELPSSVFQPESSTRLFKLAICSPCDMRFAPRIMADIHNKAPNVQLHLDAEFDRMLSERMRYQEIDFVI DYARFDEQGFSSTEIFKDELVVVTSKQHPRIQGKVTEAQLMQERHAKLSRIHGQRSFSEQAYRDLDVAAYFEGTSLSNVL YVVGQSELVTIAPRWIVENAANNAQLQILDFPFENREISGFLSWHESSEKDKGHIWLRDLLMVTCGEVVAAV >Mature_311_residues SAIASYRMESTLRGVDLNLLTVFDAVMQEQNITRAAHNLGMSQPAVSNAVARLKVMFNDELFMRQGRGIQPTQRARQLFG PVRQALQLIRNELPSSVFQPESSTRLFKLAICSPCDMRFAPRIMADIHNKAPNVQLHLDAEFDRMLSERMRYQEIDFVID YARFDEQGFSSTEIFKDELVVVTSKQHPRIQGKVTEAQLMQERHAKLSRIHGQRSFSEQAYRDLDVAAYFEGTSLSNVLY VVGQSELVTIAPRWIVENAANNAQLQILDFPFENREISGFLSWHESSEKDKGHIWLRDLLMVTCGEVVAAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI87081684, Length=295, Percent_Identity=52.5423728813559, Blast_Score=310, Evalue=1e-85, Organism=Escherichia coli, GI87081766, Length=290, Percent_Identity=24.4827586206897, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786820, Length=288, Percent_Identity=23.2638888888889, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789204, Length=219, Percent_Identity=26.9406392694064, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 35597; Mature: 35466
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAIASYRMESTLRGVDLNLLTVFDAVMQEQNITRAAHNLGMSQPAVSNAVARLKVMFND CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECC ELFMRQGRGIQPTQRARQLFGPVRQALQLIRNELPSSVFQPESSTRLFKLAICSPCDMRF HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEEECCCCCCCH APRIMADIHNKAPNVQLHLDAEFDRMLSERMRYQEIDFVIDYARFDEQGFSSTEIFKDEL HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCE VVVTSKQHPRIQGKVTEAQLMQERHAKLSRIHGQRSFSEQAYRDLDVAAYFEGTSLSNVL EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCEE YVVGQSELVTIAPRWIVENAANNAQLQILDFPFENREISGFLSWHESSEKDKGHIWLRDL EEECCCCEEEECHHHHHHCCCCCCEEEEEECCCCCCCHHHEEEECCCCCCCCCHHHHHHH LMVTCGEVVAAV HHHHHHHHHHCC >Mature Secondary Structure SAIASYRMESTLRGVDLNLLTVFDAVMQEQNITRAAHNLGMSQPAVSNAVARLKVMFND CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECC ELFMRQGRGIQPTQRARQLFGPVRQALQLIRNELPSSVFQPESSTRLFKLAICSPCDMRF HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEEECCCCCCCH APRIMADIHNKAPNVQLHLDAEFDRMLSERMRYQEIDFVIDYARFDEQGFSSTEIFKDEL HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCE VVVTSKQHPRIQGKVTEAQLMQERHAKLSRIHGQRSFSEQAYRDLDVAAYFEGTSLSNVL EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCEE YVVGQSELVTIAPRWIVENAANNAQLQILDFPFENREISGFLSWHESSEKDKGHIWLRDL EEECCCCEEEECHHHHHHCCCCCCEEEEEECCCCCCCHHHEEEECCCCCCCCCHHHHHHH LMVTCGEVVAAV HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11677609; 3519576 [H]