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The map label for this gene is nodB [H]

Identifier: 37523822

GI number: 37523822

Start: 4475245

End: 4475940

Strand: Direct

Name: nodB [H]

Synonym: glr4253

Alternate gene names: 37523822

Gene position: 4475245-4475940 (Clockwise)

Preceding gene: 37523821

Following gene: 37523824

Centisome position: 96.06

GC content: 66.67

Gene sequence:

>696_bases
GTGGCAAGCATCCCAGTGGACCTGTACTCAGGCTTTTATACGGCAGCACACCAGCTCTTGAGCGGCATTTTTCCAGATTG
CCTCTGGCAAGGCGATCCGGGTGTGCCGGAGGTGGCGCTCAGCTTCGACGACGGCCCGGATCCGCGCTACACACCGCCGC
TGTTGAATGTTCTGGCCCACCACCGGGTGCAGGCGAGTTTCTTTTTGTTGGGCAACCGGGTGGCGGCGTCCGCCGGGATT
GTCAGGGACATCTACGAAGCGGGGCATTGGCTCGGCCTGCACGGGTACGACCACCGCCCTTTTTTGCGCACCGCCGGTCT
GCGCGAAAGTTTGGAGCAATCGCGCACGCTGGTCGCTGCAGCCTGCGCTCTGGAGCCGGGGCACCTGCGCGACGTGCGTC
CGCCCTACGGGATCGCCGCCCCGGCGGTCCTCACCGCTCTGGGCCGGTGGGGATACCGTCCGGTGATGTGGCAGGTGCTC
TCGGACGATTCGCAGCGGCCCGGCGTCGAGACTGTCGTGCGGCGCACCCTCGCCCAGGTGCGCAACGGCTCGCTGATTGT
GCTCCACGACGGCAACGACGGGGCCGGTGACGATGTCGCCCGCGCGACCGACCGCATCGTGGCAACGCTCCTGGCGCGCG
GCTATCGGTTTGTGACGGTGGAGCGTTTCTGGCAAGTGCGCACCTCACCGAAGTAG

Upstream 100 bases:

>100_bases
CCGCCCGCCGCAACTGGTCAGCTGCGGCGATTATCTGCAACCGGCCTCCGTCGCGGCGCTCAAGCGCGAACTGGGCCTGG
GCTGAGCGGGGGTAACTCTT

Downstream 100 bases:

>100_bases
CGATGAAAAAACCCGGGGCCGGATGGCCTCGGGGGCAAGCTTTTGCAGGTGTGGACAAATCGCGGACAGGCGTCAGAAGT
TGTCGCCCATTTTCTGCTGG

Product: chitooligosaccharide deacetylase NodB-like protein

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MASIPVDLYSGFYTAAHQLLSGIFPDCLWQGDPGVPEVALSFDDGPDPRYTPPLLNVLAHHRVQASFFLLGNRVAASAGI
VRDIYEAGHWLGLHGYDHRPFLRTAGLRESLEQSRTLVAAACALEPGHLRDVRPPYGIAAPAVLTALGRWGYRPVMWQVL
SDDSQRPGVETVVRRTLAQVRNGSLIVLHDGNDGAGDDVARATDRIVATLLARGYRFVTVERFWQVRTSPK

Sequences:

>Translated_231_residues
MASIPVDLYSGFYTAAHQLLSGIFPDCLWQGDPGVPEVALSFDDGPDPRYTPPLLNVLAHHRVQASFFLLGNRVAASAGI
VRDIYEAGHWLGLHGYDHRPFLRTAGLRESLEQSRTLVAAACALEPGHLRDVRPPYGIAAPAVLTALGRWGYRPVMWQVL
SDDSQRPGVETVVRRTLAQVRNGSLIVLHDGNDGAGDDVARATDRIVATLLARGYRFVTVERFWQVRTSPK
>Mature_230_residues
ASIPVDLYSGFYTAAHQLLSGIFPDCLWQGDPGVPEVALSFDDGPDPRYTPPLLNVLAHHRVQASFFLLGNRVAASAGIV
RDIYEAGHWLGLHGYDHRPFLRTAGLRESLEQSRTLVAAACALEPGHLRDVRPPYGIAAPAVLTALGRWGYRPVMWQVLS
DDSQRPGVETVVRRTLAQVRNGSLIVLHDGNDGAGDDVARATDRIVATLLARGYRFVTVERFWQVRTSPK

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 25390; Mature: 25259

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIPVDLYSGFYTAAHQLLSGIFPDCLWQGDPGVPEVALSFDDGPDPRYTPPLLNVLAH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
HRVQASFFLLGNRVAASAGIVRDIYEAGHWLGLHGYDHRPFLRTAGLRESLEQSRTLVAA
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ACALEPGHLRDVRPPYGIAAPAVLTALGRWGYRPVMWQVLSDDSQRPGVETVVRRTLAQV
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
RNGSLIVLHDGNDGAGDDVARATDRIVATLLARGYRFVTVERFWQVRTSPK
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCC
>Mature Secondary Structure 
ASIPVDLYSGFYTAAHQLLSGIFPDCLWQGDPGVPEVALSFDDGPDPRYTPPLLNVLAH
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
HRVQASFFLLGNRVAASAGIVRDIYEAGHWLGLHGYDHRPFLRTAGLRESLEQSRTLVAA
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ACALEPGHLRDVRPPYGIAAPAVLTALGRWGYRPVMWQVLSDDSQRPGVETVVRRTLAQV
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
RNGSLIVLHDGNDGAGDDVARATDRIVATLLARGYRFVTVERFWQVRTSPK
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7984092; 9163424 [H]