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The map label for this gene is ydcR [C]

Identifier: 37523821

GI number: 37523821

Start: 4474252

End: 4475229

Strand: Direct

Name: ydcR [C]

Synonym: glr4252

Alternate gene names: 37523821

Gene position: 4474252-4475229 (Clockwise)

Preceding gene: 37523816

Following gene: 37523822

Centisome position: 96.03

GC content: 64.93

Gene sequence:

>978_bases
ATGAAATTCCGATTTCAGCTCCAAAGCGACAGCGACGTGCCGGCATCGACCCAGTTGCTCAATCAGATCAGTTTTGCCAT
CGCCTCACGCCAGTTTCCGCCGGGCTACCAGCTGCCCAGCACCCGTCAACTCGCCATGATCACCGGCCTGCACCGCAACA
CGATCAGCAAGGTCTATCACTTGTTGGAGGAAATGGGTCTGGTCGAAGCCCAGGCCGGTTCCGGGATCTATGTGAAGGCT
CTGGGCGGAGTGGGCGCACGCGCCACGGCCTTGGAGCGTTTTCCCGAAGCGCGTGCGCTGGTGCAAAAGAGCCTCGATGC
GCTTTTGGCCTGCGGCTGTTCGCTGGAGCAGGCGCGGGGCTTGTTTCTGGCGGAAATTGATTGGCGCCTGCGGTGCGGGG
CGGTGCTGCTGGTGGCAGCCCCGGCGCGGGATCTGGGGTTGGGGGAGTTGATGAGTTGGGAGTTGAACCGGGCGCTCGGT
ATCCCGGTGCAGCGCGTGGCCCTCGAAGAACTCGACGCGGTGCTGGAACAGACCCGGGCCGGCACCGTGGTCACCAGCCG
CTATCACCTGGCCCGGGCCGCTGCGGCAGCCGAGCCGCGGGGGATCCGGGTGTTGCCCCTCGACATCACCGACTTCAGCC
GCGAACTGGCGTTGGTGGCGGCTCTACCCAAGGACAGCTGCCTGGGTCTGGTAAGCCTCAGTTCCGATTTGTTGAATGCG
GTGGAGATGTTTCTGCACAGCCAGCACGGCGACGATGTCCTGGTGTTGACCACGCAACTGGAGGACACCCCTCGCCTGCG
GGCGATCGTCCGCTCCGCTCAGCTCATCGTCACCGATCAGGCAAGCTACGGGCCGGTCGCCCGACTCATCGAGAAGCTGC
GCGCCGATCTGGTCCGCCCGCCGCAACTGGTCAGCTGCGGCGATTATCTGCAACCGGCCTCCGTCGCGGCGCTCAAGCGC
GAACTGGGCCTGGGCTGA

Upstream 100 bases:

>100_bases
GATTATCAACATATTATTCTTGAGCCGGCTCGCTGGATAATCGGCCATGGATTCGACTTTGTGATCAGATAATAGGGAAG
CCCGCCCTGTGCAGATTCAA

Downstream 100 bases:

>100_bases
GCGGGGGTAACTCTTGTGGCAAGCATCCCAGTGGACCTGTACTCAGGCTTTTATACGGCAGCACACCAGCTCTTGAGCGG
CATTTTTCCAGATTGCCTCT

Product: GntR family transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator GntR Family; Transcriptional Regulator GntR Family Protein; GntR Family Transcriptional Regulatory Protein; GntR Family Transcriptional Repressor

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKFRFQLQSDSDVPASTQLLNQISFAIASRQFPPGYQLPSTRQLAMITGLHRNTISKVYHLLEEMGLVEAQAGSGIYVKA
LGGVGARATALERFPEARALVQKSLDALLACGCSLEQARGLFLAEIDWRLRCGAVLLVAAPARDLGLGELMSWELNRALG
IPVQRVALEELDAVLEQTRAGTVVTSRYHLARAAAAAEPRGIRVLPLDITDFSRELALVAALPKDSCLGLVSLSSDLLNA
VEMFLHSQHGDDVLVLTTQLEDTPRLRAIVRSAQLIVTDQASYGPVARLIEKLRADLVRPPQLVSCGDYLQPASVAALKR
ELGLG

Sequences:

>Translated_325_residues
MKFRFQLQSDSDVPASTQLLNQISFAIASRQFPPGYQLPSTRQLAMITGLHRNTISKVYHLLEEMGLVEAQAGSGIYVKA
LGGVGARATALERFPEARALVQKSLDALLACGCSLEQARGLFLAEIDWRLRCGAVLLVAAPARDLGLGELMSWELNRALG
IPVQRVALEELDAVLEQTRAGTVVTSRYHLARAAAAAEPRGIRVLPLDITDFSRELALVAALPKDSCLGLVSLSSDLLNA
VEMFLHSQHGDDVLVLTTQLEDTPRLRAIVRSAQLIVTDQASYGPVARLIEKLRADLVRPPQLVSCGDYLQPASVAALKR
ELGLG
>Mature_325_residues
MKFRFQLQSDSDVPASTQLLNQISFAIASRQFPPGYQLPSTRQLAMITGLHRNTISKVYHLLEEMGLVEAQAGSGIYVKA
LGGVGARATALERFPEARALVQKSLDALLACGCSLEQARGLFLAEIDWRLRCGAVLLVAAPARDLGLGELMSWELNRALG
IPVQRVALEELDAVLEQTRAGTVVTSRYHLARAAAAAEPRGIRVLPLDITDFSRELALVAALPKDSCLGLVSLSSDLLNA
VEMFLHSQHGDDVLVLTTQLEDTPRLRAIVRSAQLIVTDQASYGPVARLIEKLRADLVRPPQLVSCGDYLQPASVAALKR
ELGLG

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35165; Mature: 35165

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFRFQLQSDSDVPASTQLLNQISFAIASRQFPPGYQLPSTRQLAMITGLHRNTISKVYH
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LLEEMGLVEAQAGSGIYVKALGGVGARATALERFPEARALVQKSLDALLACGCSLEQARG
HHHHCCCEEECCCCCEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHCC
LFLAEIDWRLRCGAVLLVAAPARDLGLGELMSWELNRALGIPVQRVALEELDAVLEQTRA
CEEEEECCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
GTVVTSRYHLARAAAAAEPRGIRVLPLDITDFSRELALVAALPKDSCLGLVSLSSDLLNA
CCEEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHEEHEEECCCCHHHHHHHHHHHHHHH
VEMFLHSQHGDDVLVLTTQLEDTPRLRAIVRSAQLIVTDQASYGPVARLIEKLRADLVRP
HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHCCC
PQLVSCGDYLQPASVAALKRELGLG
CCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFRFQLQSDSDVPASTQLLNQISFAIASRQFPPGYQLPSTRQLAMITGLHRNTISKVYH
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LLEEMGLVEAQAGSGIYVKALGGVGARATALERFPEARALVQKSLDALLACGCSLEQARG
HHHHCCCEEECCCCCEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHCC
LFLAEIDWRLRCGAVLLVAAPARDLGLGELMSWELNRALGIPVQRVALEELDAVLEQTRA
CEEEEECCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
GTVVTSRYHLARAAAAAEPRGIRVLPLDITDFSRELALVAALPKDSCLGLVSLSSDLLNA
CCEEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHEEHEEECCCCHHHHHHHHHHHHHHH
VEMFLHSQHGDDVLVLTTQLEDTPRLRAIVRSAQLIVTDQASYGPVARLIEKLRADLVRP
HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHCCC
PQLVSCGDYLQPASVAALKRELGLG
CCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA