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The map label for this gene is insF1 [H]

Identifier: 37523428

GI number: 37523428

Start: 4066012

End: 4066908

Strand: Direct

Name: insF1 [H]

Synonym: glr3859

Alternate gene names: 37523428

Gene position: 4066012-4066908 (Clockwise)

Preceding gene: 37523427

Following gene: 37523430

Centisome position: 87.27

GC content: 62.88

Gene sequence:

>897_bases
ATGGAAGCACACAAAGACGATTATCCGGTAGCGTTGATGGCTAGGGTGCTGCAGGTGTCGCGTTCGGGCTACTATGCCTG
GCGGCGGCGTGTGCCCTCAAAGCGTCAGTTGCACAACCAGAAACTTGCTGAGTGCATCGAGGAAGTCTTCACTGCCTCCC
GGGCGACTTACGGCAGCCCGCGCGTGCACGCCACGCTGCGCGCGCAGGGGATTGCAGCCGGTCGGCATCGCGTTGCCAGA
CTGATGCGTCGGGCGGGTTTGGTGGCTCGGGTGCGCAAGCGCCGCTATCCACGGACCACCGACAGCCGCCATGGGTACCC
TGTCGCGGACAACCTGCTTGCCCGGCAGTTCGGTGCTTGCGAAGCGGACAGCAAATGGGTGGCGGATATCACTTACCTGC
CCACCTGCGAAGGTTGGCTGTATCTGGCGGTGGTGATGGACTTGTTTTCCCGGCGGGTGGTCGGTTGGTCGATGGCGACG
CACTTGCGCACTGAATTGGTGCTGACGGCCCTGCAGGCCGCCCTCGCCAAGCGCGTCCCGGCGTCTTCGGGGCTGTTGTT
CCATTCGGACCGCGGCAGCCAATACGCCAGTTGGGCCTACCAGCAGGCGCTCTCAGCGGCGGGTATCACCTGCAGCATGA
GCCGTAGCGGCACCTGCCTGGACAATGCGGTGGCCGAAAGCTTCTTCGGCACCCTCAAAGTCGAGTTGGTGTATCGGTTG
GGTCCTTTGGACCGCCGGCAGATGCGCACGACGGTGGCCGAGTGGCTGGAGGTATTTTACAACCGGCAACGTCGGCACTC
GGCGTTGGGGTACAGGAGCCCAGACGAATACGAACGCCACTACTGTAAGGAGGTCAAGCTGAGCAAGACAGCCGTTCACC
AGCCCACTGTCCACTAA

Upstream 100 bases:

>100_bases
GCCTGCGTCGAGAAAACAAACAACTGCAACTGGAGCGTGACTTTCTAAAAAAAGCGGCTGCTTTCTTCGCCAAAGACCAC
TCGTAGAACGCTACCGGGCG

Downstream 100 bases:

>100_bases
AGCCGGGCAAGCTCAGGTCCAGGCATGGGTACGTATCAAACGGCCTCTACTAAACTACCCCCTCAACTCAGCCTTGCTGC
ACTAGGAGGCGTCTTGAATG

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MEAHKDDYPVALMARVLQVSRSGYYAWRRRVPSKRQLHNQKLAECIEEVFTASRATYGSPRVHATLRAQGIAAGRHRVAR
LMRRAGLVARVRKRRYPRTTDSRHGYPVADNLLARQFGACEADSKWVADITYLPTCEGWLYLAVVMDLFSRRVVGWSMAT
HLRTELVLTALQAALAKRVPASSGLLFHSDRGSQYASWAYQQALSAAGITCSMSRSGTCLDNAVAESFFGTLKVELVYRL
GPLDRRQMRTTVAEWLEVFYNRQRRHSALGYRSPDEYERHYCKEVKLSKTAVHQPTVH

Sequences:

>Translated_298_residues
MEAHKDDYPVALMARVLQVSRSGYYAWRRRVPSKRQLHNQKLAECIEEVFTASRATYGSPRVHATLRAQGIAAGRHRVAR
LMRRAGLVARVRKRRYPRTTDSRHGYPVADNLLARQFGACEADSKWVADITYLPTCEGWLYLAVVMDLFSRRVVGWSMAT
HLRTELVLTALQAALAKRVPASSGLLFHSDRGSQYASWAYQQALSAAGITCSMSRSGTCLDNAVAESFFGTLKVELVYRL
GPLDRRQMRTTVAEWLEVFYNRQRRHSALGYRSPDEYERHYCKEVKLSKTAVHQPTVH
>Mature_298_residues
MEAHKDDYPVALMARVLQVSRSGYYAWRRRVPSKRQLHNQKLAECIEEVFTASRATYGSPRVHATLRAQGIAAGRHRVAR
LMRRAGLVARVRKRRYPRTTDSRHGYPVADNLLARQFGACEADSKWVADITYLPTCEGWLYLAVVMDLFSRRVVGWSMAT
HLRTELVLTALQAALAKRVPASSGLLFHSDRGSQYASWAYQQALSAAGITCSMSRSGTCLDNAVAESFFGTLKVELVYRL
GPLDRRQMRTTVAEWLEVFYNRQRRHSALGYRSPDEYERHYCKEVKLSKTAVHQPTVH

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=242, Percent_Identity=36.3636363636364, Blast_Score=150, Evalue=1e-36,
Organism=Escherichia coli, GI1788405, Length=280, Percent_Identity=43.9285714285714, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1787263, Length=280, Percent_Identity=43.9285714285714, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1786753, Length=280, Percent_Identity=43.9285714285714, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1786570, Length=280, Percent_Identity=43.9285714285714, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1786490, Length=280, Percent_Identity=43.9285714285714, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1789981, Length=270, Percent_Identity=34.4444444444444, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1790724, Length=290, Percent_Identity=26.8965517241379, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789424, Length=290, Percent_Identity=26.8965517241379, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789224, Length=290, Percent_Identity=26.8965517241379, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788305, Length=290, Percent_Identity=26.8965517241379, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787669, Length=290, Percent_Identity=26.8965517241379, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786558, Length=290, Percent_Identity=26.8965517241379, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 33921; Mature: 33921

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAHKDDYPVALMARVLQVSRSGYYAWRRRVPSKRQLHNQKLAECIEEVFTASRATYGSP
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVHATLRAQGIAAGRHRVARLMRRAGLVARVRKRRYPRTTDSRHGYPVADNLLARQFGAC
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
EADSKWVADITYLPTCEGWLYLAVVMDLFSRRVVGWSMATHLRTELVLTALQAALAKRVP
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ASSGLLFHSDRGSQYASWAYQQALSAAGITCSMSRSGTCLDNAVAESFFGTLKVELVYRL
CCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
GPLDRRQMRTTVAEWLEVFYNRQRRHSALGYRSPDEYERHYCKEVKLSKTAVHQPTVH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEAHKDDYPVALMARVLQVSRSGYYAWRRRVPSKRQLHNQKLAECIEEVFTASRATYGSP
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVHATLRAQGIAAGRHRVARLMRRAGLVARVRKRRYPRTTDSRHGYPVADNLLARQFGAC
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
EADSKWVADITYLPTCEGWLYLAVVMDLFSRRVVGWSMATHLRTELVLTALQAALAKRVP
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ASSGLLFHSDRGSQYASWAYQQALSAAGITCSMSRSGTCLDNAVAESFFGTLKVELVYRL
CCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
GPLDRRQMRTTVAEWLEVFYNRQRRHSALGYRSPDEYERHYCKEVKLSKTAVHQPTVH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]