Click here to switch to the map view.

The map label for this gene is slyA [C]

Identifier: 37523430

GI number: 37523430

Start: 4067553

End: 4068029

Strand: Direct

Name: slyA [C]

Synonym: glr3861

Alternate gene names: 37523430

Gene position: 4067553-4068029 (Clockwise)

Preceding gene: 37523428

Following gene: 37523433

Centisome position: 87.3

GC content: 65.62

Gene sequence:

>477_bases
ATGCAAGCGGGTGAGTCAATGTCGGGGGTGCTTTCGACACCAGGGCACCTGATCAGCCTGGCGGCGCGTGGGTTCGCACG
TCTGAGCGAGGCACGTCTCAAGCCGTTGGGATTCGGTGTCGGCCAGCTGCCGGTGCTGGTCGCGCTTCAGGACGGGCAGG
CCGCTTCGCAGCGGGATCTAGCCCGGTTCGCTCGGATCGAGCAGCCCTCAATGGCGCAGATGCTGGCCCGCATGGAGCGG
GACGGACTGATCTGCCGGATGCCCGACCCGGCCGACGGGCGCAGCAGCCGAATCTCGTTGACGGAGACTGCACGAACTCG
CCTGCCGGACGCCTGCGCGGTGCTGTTCCAGGGCAACCGCGACGCATTGAACGGCTTCACGGATGAGGAAGCCACCCAGC
TTGTTGTCCTGCTCACCCGGCTGATCGCCAACCTCGACCGTGTCGCAAGTGCAGAGGAACCATCTCACAGCTCTTGA

Upstream 100 bases:

>100_bases
GGCAGACCGGTCAGACCAGCCTGCTCGACGAGAACGCAGGGGCGACTGCATACCGCAGCTCGTGCTATACATAGGTAACT
ATATAACAAGATAGGCACCT

Downstream 100 bases:

>100_bases
AATCTGAGGGGCCGGTCGAAGGGTCAGATCTTCCACTTCGGGTCGGCATCGGTTCTGTAGCTACTGCCGTCCGCCCGGCT
GAAATGCAGTTACGGTTCCT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MarR Family; Transcriptional Regulator; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator; MarR Family Transcriptional Regulatory Protein; Transcriptional Regulator MarR Family Protein; Transcriptional Regulator Marr Family; MarR Family Transcriptional Regulator Protein

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQAGESMSGVLSTPGHLISLAARGFARLSEARLKPLGFGVGQLPVLVALQDGQAASQRDLARFARIEQPSMAQMLARMER
DGLICRMPDPADGRSSRISLTETARTRLPDACAVLFQGNRDALNGFTDEEATQLVVLLTRLIANLDRVASAEEPSHSS

Sequences:

>Translated_158_residues
MQAGESMSGVLSTPGHLISLAARGFARLSEARLKPLGFGVGQLPVLVALQDGQAASQRDLARFARIEQPSMAQMLARMER
DGLICRMPDPADGRSSRISLTETARTRLPDACAVLFQGNRDALNGFTDEEATQLVVLLTRLIANLDRVASAEEPSHSS
>Mature_158_residues
MQAGESMSGVLSTPGHLISLAARGFARLSEARLKPLGFGVGQLPVLVALQDGQAASQRDLARFARIEQPSMAQMLARMER
DGLICRMPDPADGRSSRISLTETARTRLPDACAVLFQGNRDALNGFTDEEATQLVVLLTRLIANLDRVASAEEPSHSS

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081950, Length=125, Percent_Identity=34.4, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16959; Mature: 16959

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAGESMSGVLSTPGHLISLAARGFARLSEARLKPLGFGVGQLPVLVALQDGQAASQRDL
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHH
ARFARIEQPSMAQMLARMERDGLICRMPDPADGRSSRISLTETARTRLPDACAVLFQGNR
HHHHHCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEHHHHHHHHCCHHHHHEECCCH
DALNGFTDEEATQLVVLLTRLIANLDRVASAEEPSHSS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQAGESMSGVLSTPGHLISLAARGFARLSEARLKPLGFGVGQLPVLVALQDGQAASQRDL
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHH
ARFARIEQPSMAQMLARMERDGLICRMPDPADGRSSRISLTETARTRLPDACAVLFQGNR
HHHHHCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEHHHHHHHHCCHHHHHEECCCH
DALNGFTDEEATQLVVLLTRLIANLDRVASAEEPSHSS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA