Click here to switch to the map view.

The map label for this gene is ycf45

Identifier: 37523337

GI number: 37523337

Start: 3975459

End: 3977066

Strand: Reverse

Name: ycf45

Synonym: gvip509

Alternate gene names: NA

Gene position: 3977066-3975459 (Counterclockwise)

Preceding gene: 37523338

Following gene: 37523336

Centisome position: 85.36

GC content: 65.49

Gene sequence:

>1608_bases
ATGCGCGTCACCGACGACCTGGAGAAGCTTCTGGCCATCCTGCCGGTACCGCTGCAGGAGCGTCTGCACGCCCACGAGCG
CCTCGACGAACTGGTCGAGGTGGTACTGGATCTGGGACGGCGGCCGGAGGCGCGCTTTCGCGAAGGCAGCGATTATCTTT
CCGAGATCCCGGTCACCCAGGACGAACTGGACGGGTGCACCGCCCGGGTGGGCGAATTTTCCGGCGACAACCGCGCGGGC
ATCGAGCGGACCCTCCACCGCATCAGTGCGATGCGCAACCGCCACGGCAAAATCATCGGTCTGACCTGCCGGGTGGGCCG
GGCGGTCTTCGGCACCATCGGCATGATCCGCGATCTGGTCGAATCGGGACGCTCGATTTTGCTGTTGGGTCGCCCCGGCG
TCGGCAAGACCACCGCCCTGCGCGAGATCGCCCGCGTGCTGGCGGACGATCTGCACAAACGCGTCGTGATTATCGACACC
AGCAACGAAATCGCCGGCGACGGCGACATTCCGCACCCGGCCATCGGCCGGGCGCGGCGCATGCAGGTGGCCCGACCCGA
GTACCAGCACCAGGTGATGATCGAGGCGGTCGAAAACCACATGCCCGAGGTGATCGTCATCGACGAAATCGGCACCGAAC
TGGAGGCCCTGGCGGCGCGCACGATCGCCGAGCGCGGCGTGCAACTGGTCGGTACCGCCCACGGCAACAAGCTCGATAAC
CTGATCAAAAATCCGACCCTAAGCGACTTGATTGGCGGCATCCAGACGGTGACCCTGGGCGACGAAGAAGCGCGCCGCCG
CGGCACCCAAAAAAGCGTGCTCGAGCGCAAGGCGCCGCCCACCTTCGAGATCGCCGTCGAGATGCAGGAGCGCTACAAGT
GGATCGTCCACAAGGATGTCGCCGAGACGGTCGACTACTTGCTGCGCGACCGCAAGCCCCTGCCCGAGACCCGTGCCCTC
AACGGCGCCGGCAAAGTGAGCGTCACGCGCGAACTCTCCGAGGCGGAGTGGGACGAACCGCTCACCACCCGCACCGGCTC
CTGGCACAGTCCGGTGCCGGTGGTGCCTTTGGGGGCGATGGAGATGGAGGCCGATTTTGACGGCAGCCGCGTGCGCATCT
ATCCCTATGCGGTCTCGCGCAGCCACCTGGAGCGCATCGTCAACACCCTGGGCTACCCGGTGCTGCTCACCAAAGAGATC
GACGAAGCGGACGTGGTGCTCGCTTTGCGCTCCCATGTGCGCGACAAGGGCAAAATCGCCGCCGTCGCCCAGAACCGCCA
GATCCCCGTGCACACGGTCAAGGCCAACACCATCCCCCACATCACCCGGGCGCTGCGGCGCATCTTGCAGATCGACGAAC
CCGGCATCCCGGGCGATCTGGACGCCGGTTTATTCGGTTCGCTCGATTCGGAGGACGAACTGGAGGCGATGGAGGAGGCC
CGCCTGGCGGTCGAGCAGATCGTACTGCCCAAGGGCCAGCCGGTCGAACTTTTGCCCAGAGCCCCGCACATCCGCAAGAT
GCAGCACGAACTGGTGGAGCACTACCGGCTCAAATCCGAGAGCTTCGGCCAGGAGCCCAACCGAAGGCTGCGTATCTATC
CGGAGTAA

Upstream 100 bases:

>100_bases
AGGCCCGAGCGCTTGTCTGCCAACTCAAACCCCATCTTCAACAGGAGGGTGCCGCCCCATGGCTTACGACGACACCGCAA
CTTCGATGAATCACAACGAA

Downstream 100 bases:

>100_bases
GTCCCAGGGGACTGTCAAGGGCGGATCTCCGCACCTGCGGGGGTCCAGCCCAGCTGTTATATTGGCAAAAAAGGCTGGGG
AGTCACCAATGAGCGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: AAA ATPase; R3H Domain Protein; ATPase; R3H Domain-Containing Protein; AAA ATPase Superfamily Protein; ATPase-Like Protein; AAA ATPase Central Domain Protein; ATPase Like Protein

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MRVTDDLEKLLAILPVPLQERLHAHERLDELVEVVLDLGRRPEARFREGSDYLSEIPVTQDELDGCTARVGEFSGDNRAG
IERTLHRISAMRNRHGKIIGLTCRVGRAVFGTIGMIRDLVESGRSILLLGRPGVGKTTALREIARVLADDLHKRVVIIDT
SNEIAGDGDIPHPAIGRARRMQVARPEYQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNKLDN
LIKNPTLSDLIGGIQTVTLGDEEARRRGTQKSVLERKAPPTFEIAVEMQERYKWIVHKDVAETVDYLLRDRKPLPETRAL
NGAGKVSVTRELSEAEWDEPLTTRTGSWHSPVPVVPLGAMEMEADFDGSRVRIYPYAVSRSHLERIVNTLGYPVLLTKEI
DEADVVLALRSHVRDKGKIAAVAQNRQIPVHTVKANTIPHITRALRRILQIDEPGIPGDLDAGLFGSLDSEDELEAMEEA
RLAVEQIVLPKGQPVELLPRAPHIRKMQHELVEHYRLKSESFGQEPNRRLRIYPE

Sequences:

>Translated_535_residues
MRVTDDLEKLLAILPVPLQERLHAHERLDELVEVVLDLGRRPEARFREGSDYLSEIPVTQDELDGCTARVGEFSGDNRAG
IERTLHRISAMRNRHGKIIGLTCRVGRAVFGTIGMIRDLVESGRSILLLGRPGVGKTTALREIARVLADDLHKRVVIIDT
SNEIAGDGDIPHPAIGRARRMQVARPEYQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNKLDN
LIKNPTLSDLIGGIQTVTLGDEEARRRGTQKSVLERKAPPTFEIAVEMQERYKWIVHKDVAETVDYLLRDRKPLPETRAL
NGAGKVSVTRELSEAEWDEPLTTRTGSWHSPVPVVPLGAMEMEADFDGSRVRIYPYAVSRSHLERIVNTLGYPVLLTKEI
DEADVVLALRSHVRDKGKIAAVAQNRQIPVHTVKANTIPHITRALRRILQIDEPGIPGDLDAGLFGSLDSEDELEAMEEA
RLAVEQIVLPKGQPVELLPRAPHIRKMQHELVEHYRLKSESFGQEPNRRLRIYPE
>Mature_535_residues
MRVTDDLEKLLAILPVPLQERLHAHERLDELVEVVLDLGRRPEARFREGSDYLSEIPVTQDELDGCTARVGEFSGDNRAG
IERTLHRISAMRNRHGKIIGLTCRVGRAVFGTIGMIRDLVESGRSILLLGRPGVGKTTALREIARVLADDLHKRVVIIDT
SNEIAGDGDIPHPAIGRARRMQVARPEYQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNKLDN
LIKNPTLSDLIGGIQTVTLGDEEARRRGTQKSVLERKAPPTFEIAVEMQERYKWIVHKDVAETVDYLLRDRKPLPETRAL
NGAGKVSVTRELSEAEWDEPLTTRTGSWHSPVPVVPLGAMEMEADFDGSRVRIYPYAVSRSHLERIVNTLGYPVLLTKEI
DEADVVLALRSHVRDKGKIAAVAQNRQIPVHTVKANTIPHITRALRRILQIDEPGIPGDLDAGLFGSLDSEDELEAMEEA
RLAVEQIVLPKGQPVELLPRAPHIRKMQHELVEHYRLKSESFGQEPNRRLRIYPE

Specific function: Unknown

COG id: COG3854

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59861; Mature: 59861

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTDDLEKLLAILPVPLQERLHAHERLDELVEVVLDLGRRPEARFREGSDYLSEIPVTQ
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCCCH
DELDGCTARVGEFSGDNRAGIERTLHRISAMRNRHGKIIGLTCRVGRAVFGTIGMIRDLV
HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHH
ESGRSILLLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDIPHPAIGRARR
HCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHCHHHH
MQVARPEYQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNKLDN
HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH
LIKNPTLSDLIGGIQTVTLGDEEARRRGTQKSVLERKAPPTFEIAVEMQERYKWIVHKDV
HHCCCCHHHHHCCCEEEEECCHHHHHCCCHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
AETVDYLLRDRKPLPETRALNGAGKVSVTRELSEAEWDEPLTTRTGSWHSPVPVVPLGAM
HHHHHHHHHCCCCCCHHHCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCE
EMEADFDGSRVRIYPYAVSRSHLERIVNTLGYPVLLTKEIDEADVVLALRSHVRDKGKIA
EECCCCCCCEEEEEEEHHCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEE
AVAQNRQIPVHTVKANTIPHITRALRRILQIDEPGIPGDLDAGLFGSLDSEDELEAMEEA
EEECCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLAVEQIVLPKGQPVELLPRAPHIRKMQHELVEHYRLKSESFGQEPNRRLRIYPE
HHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCEEECCC
>Mature Secondary Structure
MRVTDDLEKLLAILPVPLQERLHAHERLDELVEVVLDLGRRPEARFREGSDYLSEIPVTQ
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCCCCH
DELDGCTARVGEFSGDNRAGIERTLHRISAMRNRHGKIIGLTCRVGRAVFGTIGMIRDLV
HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHH
ESGRSILLLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDIPHPAIGRARR
HCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHCHHHH
MQVARPEYQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNKLDN
HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH
LIKNPTLSDLIGGIQTVTLGDEEARRRGTQKSVLERKAPPTFEIAVEMQERYKWIVHKDV
HHCCCCHHHHHCCCEEEEECCHHHHHCCCHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
AETVDYLLRDRKPLPETRALNGAGKVSVTRELSEAEWDEPLTTRTGSWHSPVPVVPLGAM
HHHHHHHHHCCCCCCHHHCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCE
EMEADFDGSRVRIYPYAVSRSHLERIVNTLGYPVLLTKEIDEADVVLALRSHVRDKGKIA
EECCCCCCCEEEEEEEHHCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEE
AVAQNRQIPVHTVKANTIPHITRALRRILQIDEPGIPGDLDAGLFGSLDSEDELEAMEEA
EEECCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLAVEQIVLPKGQPVELLPRAPHIRKMQHELVEHYRLKSESFGQEPNRRLRIYPE
HHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA