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The map label for this gene is ybbD [H]

Identifier: 37522874

GI number: 37522874

Start: 3503419

End: 3505125

Strand: Direct

Name: ybbD [H]

Synonym: glr3305

Alternate gene names: 37522874

Gene position: 3503419-3505125 (Clockwise)

Preceding gene: 37522873

Following gene: 37522875

Centisome position: 75.2

GC content: 66.84

Gene sequence:

>1707_bases
ATGATTTCCCGCCGGTTGTTTTCTTTGTGCGCCCTGGGTGGGCTGTGGCCGCTGCTGCAGCCTGCTTTTGCCCTCGCCCG
CGTTCACCACAACTGGGTGGAGCGCACCCTGGCGGGCCTGAGCCTCGAAGCGAAAATCGGCCAAGTCATGATGCCGATGC
TCGAATCGCCCGAGGAGGGGCGCGTGCTGGTCGAGCGCTTTGGGGTGGGGGGATTGATCATTTACCGCACTGGGGCGCGC
GCCCTGGCGGAGCAACTCAACGCCCTGCAGGCGCTGAGTGCGGTGCCGCTGTTGGTGAGCGCCGATTTTGAGCGCGGGGT
GGGCGCTTACATCGACGGGGCCACGGACCTGCCCATCGCCATGGCCCTGGGGGCGGCGGGAGACGCGGCTCTGGCCCGCA
CGGCGGGCGAGATTACCGCCCGCGAGGCGCGCGCCCTGGGGGTGCACGTCGTCTTTGCGCCGGTACTCGATGTCAACAAC
AACCCGCGCAACCCGATCATCAACGTGCGCTCCTTCGGCCAGTCGCCCGATTTGGTGAGCCGCCTGGGGGCGGCCTACAT
CGCGGGGCTGGAGGCTCAGGGGGCGATGGCCACCGCCAAGCACTTCCCCGGCCACGGTAACGTCAGCGCCGACACCCACC
GCGAACTGGCGGCCCTTCCAGGCAACCTGGTCGCTCTAGAACAAGTCGAACTGAAGCCCTTTCGCAGCGTGCTCGCCGGC
CGCGCTCCCCACGGGGTCATGGCCGCCCACCTCTGGGTGCAGGCTATCGATCCCGAGCCGGTGCCCGCCACCTGCTCATC
CCGAGTGATCGAGGGGTTTTTGCGGCGGCAGTTGGGCTTTGGCGGCCTGGTCTACACCGATTCGCTCGGGATGGGAGCGG
TCATCGAGTACGCGAAGGGCGATTATGCCCGCGCCCAACTGCTCGCCCTCGAAGCGGGCTGCGACGTGCTGGTCATTCCG
ACCGGGCTGAATGCTAAAGGTGAGCATTCGCCGCTGGTGGGCGTCGAGATTGGTACCAAAGCCATCAAGACGGCGCTGCG
CGCGGGGCGCCTGAGCGAAGCGCGGCTCGACCGCTCGGTGCGCCGCATTCTTGAAGCCAAAGCCTGGGCGGGTCTGGATC
GCTCCTCACAAGTCAATCTGGCTGGTCTCGCCATTCTGGGCAATCCTGCCCACCAGCAGGCGGCCGAGCGCATCGCCCGC
CGCGCCCTCACCCTGGTGCAAGATCGGGTTCCCCTGTTGCCGCTTGCCCCCGAACGCCGGTTGGGGGTGGTGAGCCTCAC
CAACTTCGAAGGGGCGGGAGCCTTCGGCCGCGACAGCGACGAATTTGTCCCTGCCCTCGGGCAGTTGCGCCCCTTCGAGC
ACGTCCGTCTATCACTGGTACCCACCCCCGCCGAACTGGAGACCGCCCGCACCCTGGCGCGCGGCTGCGATGTGTTGGTG
GTGGCCGCCTACTTGAAAGTCTTCGTGGGCGACAACAGCGCGGATCTGGCCCCGGCGCACCTGAAGGCGCTCGAGGACCT
GCGGGCTGTCAATCCGCGCATCGTATTCATCTCGTTTGGAAGTCCTTACGCTCTTGCAGCCGTCCGGCCGTTGCCGACGC
TGATTTGCGCCTACGACGATTCCAAAGCGAGTCAGGTGAGTGCCGCCGCCGCCCTGGTGTCAGATCGGCCCTGGAGCGGA
AGACTGCCTGTCAGTATCGAGCGTTAA

Upstream 100 bases:

>100_bases
TTCAAGCTGCTCGACTGCCAGCTGACCATCCACGCGGTTTGCCCGGAGTGCCAGCGCTCGATCGTGCCGATCTAGCGGCC
CCCGCCCTTAAAATGGGGCG

Downstream 100 bases:

>100_bases
ACCCCGAGTTGCTTTGGAGAAGAAAGCATGCCCGTAATCACCCCAGATCGATTTGTAGTCGAAGAGAATCCTGCCCAGGC
GTCCGCAGAACTTGACCGCG

Product: hydrolase

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MISRRLFSLCALGGLWPLLQPAFALARVHHNWVERTLAGLSLEAKIGQVMMPMLESPEEGRVLVERFGVGGLIIYRTGAR
ALAEQLNALQALSAVPLLVSADFERGVGAYIDGATDLPIAMALGAAGDAALARTAGEITAREARALGVHVVFAPVLDVNN
NPRNPIINVRSFGQSPDLVSRLGAAYIAGLEAQGAMATAKHFPGHGNVSADTHRELAALPGNLVALEQVELKPFRSVLAG
RAPHGVMAAHLWVQAIDPEPVPATCSSRVIEGFLRRQLGFGGLVYTDSLGMGAVIEYAKGDYARAQLLALEAGCDVLVIP
TGLNAKGEHSPLVGVEIGTKAIKTALRAGRLSEARLDRSVRRILEAKAWAGLDRSSQVNLAGLAILGNPAHQQAAERIAR
RALTLVQDRVPLLPLAPERRLGVVSLTNFEGAGAFGRDSDEFVPALGQLRPFEHVRLSLVPTPAELETARTLARGCDVLV
VAAYLKVFVGDNSADLAPAHLKALEDLRAVNPRIVFISFGSPYALAAVRPLPTLICAYDDSKASQVSAAAALVSDRPWSG
RLPVSIER

Sequences:

>Translated_568_residues
MISRRLFSLCALGGLWPLLQPAFALARVHHNWVERTLAGLSLEAKIGQVMMPMLESPEEGRVLVERFGVGGLIIYRTGAR
ALAEQLNALQALSAVPLLVSADFERGVGAYIDGATDLPIAMALGAAGDAALARTAGEITAREARALGVHVVFAPVLDVNN
NPRNPIINVRSFGQSPDLVSRLGAAYIAGLEAQGAMATAKHFPGHGNVSADTHRELAALPGNLVALEQVELKPFRSVLAG
RAPHGVMAAHLWVQAIDPEPVPATCSSRVIEGFLRRQLGFGGLVYTDSLGMGAVIEYAKGDYARAQLLALEAGCDVLVIP
TGLNAKGEHSPLVGVEIGTKAIKTALRAGRLSEARLDRSVRRILEAKAWAGLDRSSQVNLAGLAILGNPAHQQAAERIAR
RALTLVQDRVPLLPLAPERRLGVVSLTNFEGAGAFGRDSDEFVPALGQLRPFEHVRLSLVPTPAELETARTLARGCDVLV
VAAYLKVFVGDNSADLAPAHLKALEDLRAVNPRIVFISFGSPYALAAVRPLPTLICAYDDSKASQVSAAAALVSDRPWSG
RLPVSIER
>Mature_568_residues
MISRRLFSLCALGGLWPLLQPAFALARVHHNWVERTLAGLSLEAKIGQVMMPMLESPEEGRVLVERFGVGGLIIYRTGAR
ALAEQLNALQALSAVPLLVSADFERGVGAYIDGATDLPIAMALGAAGDAALARTAGEITAREARALGVHVVFAPVLDVNN
NPRNPIINVRSFGQSPDLVSRLGAAYIAGLEAQGAMATAKHFPGHGNVSADTHRELAALPGNLVALEQVELKPFRSVLAG
RAPHGVMAAHLWVQAIDPEPVPATCSSRVIEGFLRRQLGFGGLVYTDSLGMGAVIEYAKGDYARAQLLALEAGCDVLVIP
TGLNAKGEHSPLVGVEIGTKAIKTALRAGRLSEARLDRSVRRILEAKAWAGLDRSSQVNLAGLAILGNPAHQQAAERIAR
RALTLVQDRVPLLPLAPERRLGVVSLTNFEGAGAFGRDSDEFVPALGQLRPFEHVRLSLVPTPAELETARTLARGCDVLV
VAAYLKVFVGDNSADLAPAHLKALEDLRAVNPRIVFISFGSPYALAAVRPLPTLICAYDDSKASQVSAAAALVSDRPWSG
RLPVSIER

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=328, Percent_Identity=31.4024390243902, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1788453, Length=448, Percent_Identity=23.6607142857143, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 60225; Mature: 60225

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRRLFSLCALGGLWPLLQPAFALARVHHNWVERTLAGLSLEAKIGQVMMPMLESPEEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
RVLVERFGVGGLIIYRTGARALAEQLNALQALSAVPLLVSADFERGVGAYIDGATDLPIA
CEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEECCCCCCCHH
MALGAAGDAALARTAGEITAREARALGVHVVFAPVLDVNNNPRNPIINVRSFGQSPDLVS
HHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCEEEHHCCCCCCHHHH
RLGAAYIAGLEAQGAMATAKHFPGHGNVSADTHRELAALPGNLVALEQVELKPFRSVLAG
HHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHCC
RAPHGVMAAHLWVQAIDPEPVPATCSSRVIEGFLRRQLGFGGLVYTDSLGMGAVIEYAKG
CCCCCHHEEEHEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHECCCC
DYARAQLLALEAGCDVLVIPTGLNAKGEHSPLVGVEIGTKAIKTALRAGRLSEARLDRSV
CHHHHEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHH
RRILEAKAWAGLDRSSQVNLAGLAILGNPAHQQAAERIARRALTLVQDRVPLLPLAPERR
HHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LGVVSLTNFEGAGAFGRDSDEFVPALGQLRPFEHVRLSLVPTPAELETARTLARGCDVLV
CCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHH
VAAYLKVFVGDNSADLAPAHLKALEDLRAVNPRIVFISFGSPYALAAVRPLPTLICAYDD
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHCCCCEEEEEECC
SKASQVSAAAALVSDRPWSGRLPVSIER
CCHHHHHHHHHHHCCCCCCCCCCEEECC
>Mature Secondary Structure
MISRRLFSLCALGGLWPLLQPAFALARVHHNWVERTLAGLSLEAKIGQVMMPMLESPEEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
RVLVERFGVGGLIIYRTGARALAEQLNALQALSAVPLLVSADFERGVGAYIDGATDLPIA
CEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEECCCCCCCHH
MALGAAGDAALARTAGEITAREARALGVHVVFAPVLDVNNNPRNPIINVRSFGQSPDLVS
HHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCEEEHHCCCCCCHHHH
RLGAAYIAGLEAQGAMATAKHFPGHGNVSADTHRELAALPGNLVALEQVELKPFRSVLAG
HHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHCC
RAPHGVMAAHLWVQAIDPEPVPATCSSRVIEGFLRRQLGFGGLVYTDSLGMGAVIEYAKG
CCCCCHHEEEHEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHECCCC
DYARAQLLALEAGCDVLVIPTGLNAKGEHSPLVGVEIGTKAIKTALRAGRLSEARLDRSV
CHHHHEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHH
RRILEAKAWAGLDRSSQVNLAGLAILGNPAHQQAAERIARRALTLVQDRVPLLPLAPERR
HHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LGVVSLTNFEGAGAFGRDSDEFVPALGQLRPFEHVRLSLVPTPAELETARTLARGCDVLV
CCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHH
VAAYLKVFVGDNSADLAPAHLKALEDLRAVNPRIVFISFGSPYALAAVRPLPTLICAYDD
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHCCCCEEEEEECC
SKASQVSAAAALVSDRPWSGRLPVSIER
CCHHHHHHHHHHHCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]