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The map label for this gene is ygcF [H]

Identifier: 37522605

GI number: 37522605

Start: 3231503

End: 3232147

Strand: Reverse

Name: ygcF [H]

Synonym: gll3036

Alternate gene names: 37522605

Gene position: 3232147-3231503 (Counterclockwise)

Preceding gene: 37522606

Following gene: 37522604

Centisome position: 69.37

GC content: 64.65

Gene sequence:

>645_bases
GTGAACGCTGCTTCGACTGTTGTCAAACCCGTGTCCGCCCAAAGCATCCCGGTGCAGGAAACCTTTGGCCCTACTATTCA
GGGTGAAGGGTACTGGGCGGGCGCTGTGGTCGATTTCATCCGCCTCTACGGCTGTCCGGTCGGGTGTCCCTGGTGCGATA
CAGGTTACGCAGACGGCGGCCCCCAACTGCCGCGCGCAGTGCGGACCTTTTCAGACTTGATTTTGGAGCTGAAGTCGCCG
CGGGTGGTCATCTCCGGGGGAGAGCCGTTCATTCATGCAGCCCTACCGGCTCTGGTCGAGGCAATCGGCAGGACCGGCCG
GGCCGTGGCGATCGAGACGTCGGGAGCCTTCTGGCAGCCGGTGCCCGATTGGGCCTGGGTGACCCTCAGTCCCAAAGAAC
ACGTCTCGCCCCGCCATCCGGTGAACCCGCAGATGTGGCGGCGGGCCAACGAGGTCAAAATCGTGATTGCCGGCGGCGCG
GAACTCGATGTTTACCGGCGCTTTTTGCCGCCGGGGGTGCCCGTCTCGCTGCAGCCGGAGTGGGAAGCGCGCGAGCGCAC
GCTGCCCTTGACCCTCGAACTGCTCAAGGCCCATCCCCGCTACCGGCTCTCGGTGCAGTTGCACAAATACCTCCAGGTGC
CGTGA

Upstream 100 bases:

>100_bases
GCTGCGGCCGATGCCACGCCTGCATCCTGCGCGACCGGGGCTTCCGCGAGGCGGGGGTGCCCGACCCGATCTGGAAATTT
CGCAAAGAGCCCGTCTCGCT

Downstream 100 bases:

>100_bases
TGCAGAGCGCTTACCTACAGGCGGTGCCGCCCGAAGAGCAGGTGCACCAGGGGGCCATCCGCTACGCCTACCGCATCGGG
GCGCACTTTCGCCGCCGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNAASTVVKPVSAQSIPVQETFGPTIQGEGYWAGAVVDFIRLYGCPVGCPWCDTGYADGGPQLPRAVRTFSDLILELKSP
RVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAFWQPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGA
ELDVYRRFLPPGVPVSLQPEWEARERTLPLTLELLKAHPRYRLSVQLHKYLQVP

Sequences:

>Translated_214_residues
MNAASTVVKPVSAQSIPVQETFGPTIQGEGYWAGAVVDFIRLYGCPVGCPWCDTGYADGGPQLPRAVRTFSDLILELKSP
RVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAFWQPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGA
ELDVYRRFLPPGVPVSLQPEWEARERTLPLTLELLKAHPRYRLSVQLHKYLQVP
>Mature_214_residues
MNAASTVVKPVSAQSIPVQETFGPTIQGEGYWAGAVVDFIRLYGCPVGCPWCDTGYADGGPQLPRAVRTFSDLILELKSP
RVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAFWQPVPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGA
ELDVYRRFLPPGVPVSLQPEWEARERTLPLTLELLKAHPRYRLSVQLHKYLQVP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=224, Percent_Identity=34.375, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23573; Mature: 23573

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAASTVVKPVSAQSIPVQETFGPTIQGEGYWAGAVVDFIRLYGCPVGCPWCDTGYADGG
CCCHHHHCCCCCCCCCCCHHHCCCEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PQLPRAVRTFSDLILELKSPRVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAFWQP
CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
VPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGAELDVYRRFLPPGVPVSLQPE
CCCCEEEEECCHHHCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCEEECCC
WEARERTLPLTLELLKAHPRYRLSVQLHKYLQVP
CCHHHCCCCEEHHHHHCCCCEEEEEEEEEHCCCC
>Mature Secondary Structure
MNAASTVVKPVSAQSIPVQETFGPTIQGEGYWAGAVVDFIRLYGCPVGCPWCDTGYADGG
CCCHHHHCCCCCCCCCCCHHHCCCEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PQLPRAVRTFSDLILELKSPRVVISGGEPFIHAALPALVEAIGRTGRAVAIETSGAFWQP
CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
VPDWAWVTLSPKEHVSPRHPVNPQMWRRANEVKIVIAGGAELDVYRRFLPPGVPVSLQPE
CCCCEEEEECCHHHCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCEEECCC
WEARERTLPLTLELLKAHPRYRLSVQLHKYLQVP
CCHHHCCCCEEHHHHHCCCCEEEEEEEEEHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]