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The map label for this gene is yodJ [H]

Identifier: 37521946

GI number: 37521946

Start: 2535597

End: 2536352

Strand: Direct

Name: yodJ [H]

Synonym: glr2377

Alternate gene names: 37521946

Gene position: 2535597-2536352 (Clockwise)

Preceding gene: 37521945

Following gene: 37521948

Centisome position: 54.42

GC content: 64.68

Gene sequence:

>756_bases
ATGACTGATTTCGACGACATCCCGGTAATCCAGCGCGCCGCTGCGACGGCGCCGATACCTGTCCCGACGACGAAGCGCCC
GCTTCCCAAGCCTCCGGTGCTCGCCGCGGTGGCCGGTATGGTGGTTGCCGTGGGTCTGGGGTTATTTTTGTTATTGCCCA
AGCCCGGGGAAGAGTCGCCCAAGGCGGCCCAGGCGAGTGCCCCTGCGAGTGGTGCAAAGTCGGCGAGCGCGCCTGCGGGC
ACGCTGCTTGGCCACTACCGCTACAAAGAAGCTTTCAGGGGCGATCTGGTGCAGATTGACTTCTGGCGGGACACCGACCG
GCCCATCTTGTTGCACAAGGGGGCGGTGGAGAGTTACCGACAGCTGGTGCAGGCGGCCCGCGCGGAGGGGGTGATTTTGG
TGACGCTCTCGGGATTCCGCTCCGAGCGCTACCAGCAAGAAGTTTACGCGCGCCAGTTGGGCAAAGCCGGCACCACCAGC
ACCGCCACGCTCATCAACGCTCCGCCCGGCTACTCCGAGCACCACACCGGCTACGCCATCGACTTTGGCGACGGTACCGT
GCCAGGGGCGAATCTCAGGCCGCGCTTCGAGCAGACCGTCGCCTTTCGCTGGCTCACCGCCAACGCCCGCAAGTTCGGCT
TCGAGATGTCCTTTCCCAAGGACAATCCCCAACGGGTGAGCTACGAGCCCTGGCACTGGCGCTACGTGGGCGACAAGCGC
AGCATCGAGACGTTTTATCTGGGCAAGGGCCGTTAG

Upstream 100 bases:

>100_bases
GACTGGCGGGGAAGGAATAGGTTATGGTCTTACGAAAAATGGCAGCCGATTTTGAAATTTTTCTCCGGGCTGTTCTGGGA
AACGCGACACCCGCTATCCG

Downstream 100 bases:

>100_bases
CGAAACAAACACCGGCACTGTCTACAGAGACACCGGCATCGCAGCAGCCAGTTCTAGGCGGCGCTGCACCTCGTCTCCTC
CCAGGATCGTGAGCACCTCG

Product: D,D-carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTDFDDIPVIQRAAATAPIPVPTTKRPLPKPPVLAAVAGMVVAVGLGLFLLLPKPGEESPKAAQASAPASGAKSASAPAG
TLLGHYRYKEAFRGDLVQIDFWRDTDRPILLHKGAVESYRQLVQAARAEGVILVTLSGFRSERYQQEVYARQLGKAGTTS
TATLINAPPGYSEHHTGYAIDFGDGTVPGANLRPRFEQTVAFRWLTANARKFGFEMSFPKDNPQRVSYEPWHWRYVGDKR
SIETFYLGKGR

Sequences:

>Translated_251_residues
MTDFDDIPVIQRAAATAPIPVPTTKRPLPKPPVLAAVAGMVVAVGLGLFLLLPKPGEESPKAAQASAPASGAKSASAPAG
TLLGHYRYKEAFRGDLVQIDFWRDTDRPILLHKGAVESYRQLVQAARAEGVILVTLSGFRSERYQQEVYARQLGKAGTTS
TATLINAPPGYSEHHTGYAIDFGDGTVPGANLRPRFEQTVAFRWLTANARKFGFEMSFPKDNPQRVSYEPWHWRYVGDKR
SIETFYLGKGR
>Mature_250_residues
TDFDDIPVIQRAAATAPIPVPTTKRPLPKPPVLAAVAGMVVAVGLGLFLLLPKPGEESPKAAQASAPASGAKSASAPAGT
LLGHYRYKEAFRGDLVQIDFWRDTDRPILLHKGAVESYRQLVQAARAEGVILVTLSGFRSERYQQEVYARQLGKAGTTST
ATLINAPPGYSEHHTGYAIDFGDGTVPGANLRPRFEQTVAFRWLTANARKFGFEMSFPKDNPQRVSYEPWHWRYVGDKRS
IETFYLGKGR

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27514; Mature: 27382

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFDDIPVIQRAAATAPIPVPTTKRPLPKPPVLAAVAGMVVAVGLGLFLLLPKPGEESP
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCC
KAAQASAPASGAKSASAPAGTLLGHYRYKEAFRGDLVQIDFWRDTDRPILLHKGAVESYR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCHHHHHH
QLVQAARAEGVILVTLSGFRSERYQQEVYARQLGKAGTTSTATLINAPPGYSEHHTGYAI
HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEE
DFGDGTVPGANLRPRFEQTVAFRWLTANARKFGFEMSFPKDNPQRVSYEPWHWRYVGDKR
ECCCCCCCCCCCCCCHHHHEEEEEEECCHHHHCEEECCCCCCCCCCCCCCEEEEECCCCC
SIETFYLGKGR
CEEEEEECCCC
>Mature Secondary Structure 
TDFDDIPVIQRAAATAPIPVPTTKRPLPKPPVLAAVAGMVVAVGLGLFLLLPKPGEESP
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCC
KAAQASAPASGAKSASAPAGTLLGHYRYKEAFRGDLVQIDFWRDTDRPILLHKGAVESYR
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCHHHHHH
QLVQAARAEGVILVTLSGFRSERYQQEVYARQLGKAGTTSTATLINAPPGYSEHHTGYAI
HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEE
DFGDGTVPGANLRPRFEQTVAFRWLTANARKFGFEMSFPKDNPQRVSYEPWHWRYVGDKR
ECCCCCCCCCCCCCCHHHHEEEEEEECCHHHHCEEECCCCCCCCCCCCCCEEEEECCCCC
SIETFYLGKGR
CEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]