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The map label for this gene is oppA [H]

Identifier: 37521710

GI number: 37521710

Start: 2292097

End: 2293689

Strand: Direct

Name: oppA [H]

Synonym: glr2141

Alternate gene names: 37521710

Gene position: 2292097-2293689 (Clockwise)

Preceding gene: 37521709

Following gene: 37521711

Centisome position: 49.2

GC content: 64.78

Gene sequence:

>1593_bases
ATGCTTATCCGTTCGAACCGCCGCGACCTATTGCGCTCCGGCCTGCTGCTCGCTCCGCTGTTGGCAGGCTGCAGTCGGAC
GCCCTCCTCCTACTTCGGCAAAACCACACCGCCCACCCGCGACCGGGTGCGCATCGGCAACGCCGCCGAACCGCGCTCGC
TCGACCCGCACAAAGTCGAAGGGGCGCTGGGCGAACTGAATTTGTGCATGGCACTTTTTGAAGGACTCACCGAGTACCAT
CCGCGCACCCTCAGACCCCTGCCGGCCCTGGCACTGCGCTGGCACTCCGAAGACAACGCCCGGGTGTGGATTTTTAATTT
GCGGGCGGGGGCGCGCTGGAGCGACGATAGTCCCTGCACGGCCGCGGATTTTGTCTACAGCTGGCGGCGGGCGCTCGATC
CGAATACCGGCTGCCCCTACGCCAACGTGCTTTACTACCTCAAGAACGCCCGGGCGATCAACGAGGAGAAATTGCCTGCA
GACGCCCTCGGGGTAAGCGCACCGGACCCGCTTACCCTGCGCATCGAAATGGAAGGACCGACGGCGTTTTTTCCGCTGCT
GTCGGCGTTTTTTGTCTACCGCCCGGTGCCAGCCCAGGCGATTGCCCGCCACGGTGATTGCTGGGCAAGACCCGGCAAGA
TGATCAGCAACGGCGCATTTGTGCTGGCGGCCCACCGCCCCTACGACGAAATTCGGGTGGTGCGCTCCGAAACCTACTGG
GATCGCTCCCGGGTGCGTCTGGCGGAAGCGTCCTTTTTGCCCGTTGTGGACGGCTCCCAGAACGTTAATCTCTACCAGGC
GGGCGAACTGGACGTGACGGTGGGGGGGGTGTTGCCCCGGCCGCTATTGCCCGCCCTGCGCCAGTACCGCGACTACCACA
CCGACGGCCGCTTTATCACCTATTACTTGAGCTTCAACTGCAGCCGGCTGCCTTTCGACCGCCAGGGCGCGCGCGCCACC
TTAAGCAATGCCGTCGAGCGCGAAGATCTGGCGCTGCGCTATCTCAAGGGCGACGCCGTACCGGCGAGCAGTTTCGTGCC
GCCGGGCATCCCCGGCTACGGCGGCCCCGGTGCGCTGCGCCCTGCAGGTGAGAGCAACCCGCCCGAGCGCTTCACCATCC
ACTGCGCCAACCGCGAGCCCGACCGGACGGTGGCAGCCGTGCTGCAGAGCGTCTGGAAGCGGCGTTTGGGGGTGGCTCCC
GAGGTCAGTACCGAGGAGCTGCAAACTTTCCTGGCGCGCATCCGTCGCCACGACTACGACGTGGCAGTGTCGCGCTGGGG
TGGCGATTACTTAGATCCGACCACGTTTCTCGATCTCTACGACGGACCAACTCCCAAAAACTACCCCAACTGGCTGGATC
CGGTCTACCAACTCCTGCTTGCCCGGGCACGGCGCGAGGGCGACCCGGTTCGCCGCTACCGGCTACTGGCCCAGGCCGAG
GCACGATTGCTTAGCGAGGCTCCCATCGCTCCACTGTTTCACACGGGCCTGGAGTACCTGCAAAAGCCCTGGCTGGTAGG
CTGGGAACCGAACTTGCAGGATCTCCACCCGCTCAAGTATGTGGCTGTCGACCGGCGCTGGCGAGGGTCATAA

Upstream 100 bases:

>100_bases
CTGCGCGGTGTGCTCAGACAGATCGACTGGGCAAGTACCCAAAACCCAGCTCGCCAACTCCCCCTGACACCTGACACCTG
ACACCTGTACCATAGTCCGG

Downstream 100 bases:

>100_bases
GCCAATCGCGCCTACCCTGTAGGATTGGAGAGATTTGCAGCCGGCTGCCGGAGAACACCGTGCGCACGGATCATCTCTTT
TTCCGTCTATTTCAAGCCCT

Product: periplasmic oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MLIRSNRRDLLRSGLLLAPLLAGCSRTPSSYFGKTTPPTRDRVRIGNAAEPRSLDPHKVEGALGELNLCMALFEGLTEYH
PRTLRPLPALALRWHSEDNARVWIFNLRAGARWSDDSPCTAADFVYSWRRALDPNTGCPYANVLYYLKNARAINEEKLPA
DALGVSAPDPLTLRIEMEGPTAFFPLLSAFFVYRPVPAQAIARHGDCWARPGKMISNGAFVLAAHRPYDEIRVVRSETYW
DRSRVRLAEASFLPVVDGSQNVNLYQAGELDVTVGGVLPRPLLPALRQYRDYHTDGRFITYYLSFNCSRLPFDRQGARAT
LSNAVEREDLALRYLKGDAVPASSFVPPGIPGYGGPGALRPAGESNPPERFTIHCANREPDRTVAAVLQSVWKRRLGVAP
EVSTEELQTFLARIRRHDYDVAVSRWGGDYLDPTTFLDLYDGPTPKNYPNWLDPVYQLLLARARREGDPVRRYRLLAQAE
ARLLSEAPIAPLFHTGLEYLQKPWLVGWEPNLQDLHPLKYVAVDRRWRGS

Sequences:

>Translated_530_residues
MLIRSNRRDLLRSGLLLAPLLAGCSRTPSSYFGKTTPPTRDRVRIGNAAEPRSLDPHKVEGALGELNLCMALFEGLTEYH
PRTLRPLPALALRWHSEDNARVWIFNLRAGARWSDDSPCTAADFVYSWRRALDPNTGCPYANVLYYLKNARAINEEKLPA
DALGVSAPDPLTLRIEMEGPTAFFPLLSAFFVYRPVPAQAIARHGDCWARPGKMISNGAFVLAAHRPYDEIRVVRSETYW
DRSRVRLAEASFLPVVDGSQNVNLYQAGELDVTVGGVLPRPLLPALRQYRDYHTDGRFITYYLSFNCSRLPFDRQGARAT
LSNAVEREDLALRYLKGDAVPASSFVPPGIPGYGGPGALRPAGESNPPERFTIHCANREPDRTVAAVLQSVWKRRLGVAP
EVSTEELQTFLARIRRHDYDVAVSRWGGDYLDPTTFLDLYDGPTPKNYPNWLDPVYQLLLARARREGDPVRRYRLLAQAE
ARLLSEAPIAPLFHTGLEYLQKPWLVGWEPNLQDLHPLKYVAVDRRWRGS
>Mature_530_residues
MLIRSNRRDLLRSGLLLAPLLAGCSRTPSSYFGKTTPPTRDRVRIGNAAEPRSLDPHKVEGALGELNLCMALFEGLTEYH
PRTLRPLPALALRWHSEDNARVWIFNLRAGARWSDDSPCTAADFVYSWRRALDPNTGCPYANVLYYLKNARAINEEKLPA
DALGVSAPDPLTLRIEMEGPTAFFPLLSAFFVYRPVPAQAIARHGDCWARPGKMISNGAFVLAAHRPYDEIRVVRSETYW
DRSRVRLAEASFLPVVDGSQNVNLYQAGELDVTVGGVLPRPLLPALRQYRDYHTDGRFITYYLSFNCSRLPFDRQGARAT
LSNAVEREDLALRYLKGDAVPASSFVPPGIPGYGGPGALRPAGESNPPERFTIHCANREPDRTVAAVLQSVWKRRLGVAP
EVSTEELQTFLARIRRHDYDVAVSRWGGDYLDPTTFLDLYDGPTPKNYPNWLDPVYQLLLARARREGDPVRRYRLLAQAE
ARLLSEAPIAPLFHTGLEYLQKPWLVGWEPNLQDLHPLKYVAVDRRWRGS

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=529, Percent_Identity=30.6238185255198, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI87081878, Length=484, Percent_Identity=33.2644628099174, Blast_Score=248, Evalue=7e-67,
Organism=Escherichia coli, GI1789397, Length=487, Percent_Identity=31.4168377823409, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI1787762, Length=489, Percent_Identity=21.6768916155419, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787052, Length=514, Percent_Identity=21.011673151751, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59698; Mature: 59698

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRSNRRDLLRSGLLLAPLLAGCSRTPSSYFGKTTPPTRDRVRIGNAAEPRSLDPHKVE
CCCCCCHHHHHHCCHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHH
GALGELNLCMALFEGLTEYHPRTLRPLPALALRWHSEDNARVWIFNLRAGARWSDDSPCT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCEEEEEEECCCCCCCCCCCCH
AADFVYSWRRALDPNTGCPYANVLYYLKNARAINEEKLPADALGVSAPDPLTLRIEMEGP
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHCCCHHHCCCCCCCCEEEEEEECCC
TAFFPLLSAFFVYRPVPAQAIARHGDCWARPGKMISNGAFVLAAHRPYDEIRVVRSETYW
HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEECCCCEEEEECCCHHHHEEEHHCCHH
DRSRVRLAEASFLPVVDGSQNVNLYQAGELDVTVGGVLPRPLLPALRQYRDYHTDGRFIT
CHHHEEEECCCEEEEECCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
YYLSFNCSRLPFDRQGARATLSNAVEREDLALRYLKGDAVPASSFVPPGIPGYGGPGALR
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC
PAGESNPPERFTIHCANREPDRTVAAVLQSVWKRRLGVAPEVSTEELQTFLARIRRHDYD
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
VAVSRWGGDYLDPTTFLDLYDGPTPKNYPNWLDPVYQLLLARARREGDPVRRYRLLAQAE
EEEECCCCCCCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ARLLSEAPIAPLFHTGLEYLQKPWLVGWEPNLQDLHPLKYVAVDRRWRGS
HHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MLIRSNRRDLLRSGLLLAPLLAGCSRTPSSYFGKTTPPTRDRVRIGNAAEPRSLDPHKVE
CCCCCCHHHHHHCCHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHH
GALGELNLCMALFEGLTEYHPRTLRPLPALALRWHSEDNARVWIFNLRAGARWSDDSPCT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCEEEEEEECCCCCCCCCCCCH
AADFVYSWRRALDPNTGCPYANVLYYLKNARAINEEKLPADALGVSAPDPLTLRIEMEGP
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHCCCHHHCCCCCCCCEEEEEEECCC
TAFFPLLSAFFVYRPVPAQAIARHGDCWARPGKMISNGAFVLAAHRPYDEIRVVRSETYW
HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEECCCCEEEEECCCHHHHEEEHHCCHH
DRSRVRLAEASFLPVVDGSQNVNLYQAGELDVTVGGVLPRPLLPALRQYRDYHTDGRFIT
CHHHEEEECCCEEEEECCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
YYLSFNCSRLPFDRQGARATLSNAVEREDLALRYLKGDAVPASSFVPPGIPGYGGPGALR
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC
PAGESNPPERFTIHCANREPDRTVAAVLQSVWKRRLGVAPEVSTEELQTFLARIRRHDYD
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
VAVSRWGGDYLDPTTFLDLYDGPTPKNYPNWLDPVYQLLLARARREGDPVRRYRLLAQAE
EEEECCCCCCCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ARLLSEAPIAPLFHTGLEYLQKPWLVGWEPNLQDLHPLKYVAVDRRWRGS
HHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]