Click here to switch to the map view.

The map label for this gene is ycf57 [C]

Identifier: 37521674

GI number: 37521674

Start: 2257520

End: 2257870

Strand: Reverse

Name: ycf57 [C]

Synonym: gvip289

Alternate gene names: 37521674

Gene position: 2257870-2257520 (Counterclockwise)

Preceding gene: 37521675

Following gene: 37521672

Centisome position: 48.46

GC content: 62.68

Gene sequence:

>351_bases
ATGATCAACCTCACCGAAACCGCCCTCCAAGAAGTCAGGCGCCTGCAGAAAAAAAGCGGCAACGACCGGCAGTTCTTGCG
TCTGGGGGTGGTCAACGCCGGCTGCTCCGGCATGTCCTATACGATGAAGTTCGACACCGAAAGCCGGGCGGACGACCACC
TGTTTGATCAGGACGGCGTGCGTGTGGCCGTTGATGCCGCAAGCCTGCCCTATCTTGGGGAGCTCACCCTCGACTGGTCC
GGCGATCTGATGGGGGGCGGCTTCCGCTTCCACAACCCCAGTGCCACCCACACCTGCGGCTGCGGTTCCTCCTTCTCGAC
CAATCCCGAGGCGGCTATCGCCGCTCACTGA

Upstream 100 bases:

>100_bases
CCATGTTTGGGTGCGCTTGGGCGCAGCCGCCGCTTCTGCAAAAGGCAGGTGCATCGGTGGGCTACAATGCGCGTAACAAA
GCGATTGTGTGGTTCTGACC

Downstream 100 bases:

>100_bases
ATCTGCGCCTCTGCGTCGGGATCCGGAGCCATTTCGCCGAGGGCGGTCCAGCCGGGTTCCCACAGATCCCGGTTTTTGAG
GGTCTTGGCGTTCACCCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MINLTETALQEVRRLQKKSGNDRQFLRLGVVNAGCSGMSYTMKFDTESRADDHLFDQDGVRVAVDAASLPYLGELTLDWS
GDLMGGGFRFHNPSATHTCGCGSSFSTNPEAAIAAH

Sequences:

>Translated_116_residues
MINLTETALQEVRRLQKKSGNDRQFLRLGVVNAGCSGMSYTMKFDTESRADDHLFDQDGVRVAVDAASLPYLGELTLDWS
GDLMGGGFRFHNPSATHTCGCGSSFSTNPEAAIAAH
>Mature_116_residues
MINLTETALQEVRRLQKKSGNDRQFLRLGVVNAGCSGMSYTMKFDTESRADDHLFDQDGVRVAVDAASLPYLGELTLDWS
GDLMGGGFRFHNPSATHTCGCGSSFSTNPEAAIAAH

Specific function: Unknown

COG id: COG0316

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesB/iscA family [H]

Homologues:

Organism=Homo sapiens, GI160420328, Length=108, Percent_Identity=38.8888888888889, Blast_Score=78, Evalue=1e-15,
Organism=Homo sapiens, GI52426768, Length=107, Percent_Identity=36.4485981308411, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788877, Length=105, Percent_Identity=40, Blast_Score=79, Evalue=8e-17,
Organism=Escherichia coli, GI1786351, Length=105, Percent_Identity=37.1428571428571, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI1787974, Length=106, Percent_Identity=33.9622641509434, Blast_Score=72, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25146411, Length=106, Percent_Identity=35.8490566037736, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193209025, Length=106, Percent_Identity=35.8490566037736, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71998452, Length=84, Percent_Identity=41.6666666666667, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323001, Length=105, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24649697, Length=108, Percent_Identity=35.1851851851852, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24642263, Length=106, Percent_Identity=35.8490566037736, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000361
- InterPro:   IPR016092
- InterPro:   IPR017870 [H]

Pfam domain/function: PF01521 Fe-S_biosyn [H]

EC number: NA

Molecular weight: Translated: 12542; Mature: 12542

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS01152 HESB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLTETALQEVRRLQKKSGNDRQFLRLGVVNAGCSGMSYTMKFDTESRADDHLFDQDGV
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
RVAVDAASLPYLGELTLDWSGDLMGGGFRFHNPSATHTCGCGSSFSTNPEAAIAAH
EEEEECCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MINLTETALQEVRRLQKKSGNDRQFLRLGVVNAGCSGMSYTMKFDTESRADDHLFDQDGV
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
RVAVDAASLPYLGELTLDWSGDLMGGGFRFHNPSATHTCGCGSSFSTNPEAAIAAH
EEEEECCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]