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The map label for this gene is ccmM [H]

Identifier: 37521662

GI number: 37521662

Start: 2246256

End: 2248262

Strand: Reverse

Name: ccmM [H]

Synonym: gvip286

Alternate gene names: 37521662

Gene position: 2248262-2246256 (Counterclockwise)

Preceding gene: 37521663

Following gene: 37521661

Centisome position: 48.26

GC content: 66.07

Gene sequence:

>2007_bases
ATGGTTGCACAAAGCCGCCTTGCGGCTCCCCCTACCCCGTGGTCGAGACGGTTGGCTGAAGCCGCAATCGATCCGTCCGC
CTACGTACACAGTTTCTCGCAGATCATCGGCGATGTACGCATCGGCGCCAACGTGCTGGTCTCGCCGGGAACCTCGATCC
GTGCCGACGAAGGTTCACCTTTTCACATTGGTGCCAACACCAACATCCAGGACGGCGTGGTCATGCACGGCCTGCAGGAA
GGGCGGGTCAACGGCGACGACGGCCAATCCTACTCGGTGTGGGTCGGCTCCAACACCTCGATTACCCACATGGCCCTCAT
CCACGGGCCGTGCTACGTCGGCGACGATTGCTTCATCGGTTTTCGCTCGACGATCTTCAACGCCCGGGTGGGCAAAGGCT
GCATCGTGATGATGCACGCGCTGGTGCAGGATGTGGAAATCCCGCCCGGCAAGTACGTGCCCTCCGGCGCGGTGATCACC
TCCCAGCAGCAGGCCAACCGCCTGCCCGACGCCCAGGATATCGACATCCACTTTGCCAAGCACGTCATCGGCATCAACGA
TGCGTTGCGCCAGGGTTACCGCTGCGCCGCCGACATCGAGTGTATCGTGCCGATTCGCGACGAGAGCAGCCCGGCGGCGC
CGGGCACCAACGGTAAACCCACACCCAAAACCCACGCTCAGGTAAGCAGTATGTTCATGACCAGTCAAACCCTCGACACG
GTGCGCTCCCTGCTTGCCCAGGGCTGTCGCCTCGCGGTCGAATTCGCCGACGAGCGCCGCTTCCGGGCCAACTCGTGGGT
GAGCGGTCCGGCGATCCAGGCGGCCCGCGAGCCGGAGGTGGTCAGTGCCCTGGAGAACGTGCTGCGCGAGCATGCGGGCG
AATATGTCCGCATCATCGGCATTGATCCCAAAGCCAAGCGCCGCGTGGCCGAGACCGTCATCCAACGGCCCGACGGCAAA
CCGGTCGAGGCCAACAGCAGCAGCGGCAAGTTCGCTATGACCCCGGCCGCTCCCCCGGGCGGTTCCCACCGGCCCGGCAA
CGGCGGTCTGTTGAGTCCGGAGGCAGCCCAGCAAGTGCAATCGCTCCTTTCCCAGGGCTATCGCATCGGCACCGAACACG
CCGATGAGCGGCGATTCCGGGCCAATTCCTGGCAGAATTGCGCGCCGATTGCCGCCACCCGCGAACCGGAAGTGCTCGCA
GCCCTCGAAGGTTGTCTACAGGAGCACGCGGGCGAATACGTCCGCATCATCGGCATCGACCCGAAGGCCAAGCGCCGTGT
GGCCGAGACGATTATTCAGCACCCCAACGGCAAGCAACCCAGTGGGGGAGCCGCCGCTCCAGCTCAGGGTTACAACACCG
TCAGCCATCGGGCGAGCGGGGGCGGCATGCTCGATGCCGCCGTGCTCGATATGGTGCGTTCACTGCTCAGCCAGGGCCAT
CGCCTCGGCGTCGAATTTGCTGACGAGCGCCGCTTCCGGGCCAACTCGTGGGTGAGCGGTCCGGCGATCCAGGCGGCCCG
CGAGCCGGAGGTGGTCAGTGCCCTGGAGAACGTGCTGCGCGAGCATGCGGGCGAATATGTCCGCATCATCGGCATTGATC
CCAAAGCCAAGCGCCGCGTGGCCGAGACCGTCATCCAGCGGCCCAACGGTAGGCCCGTCTCGGGGGGGGCTGCTACTGCG
AGCACACCGGCCGCGGGCGGCTACAGTCCCGCACCGGCACACGCACCCGGCCCGATGCGCAGCAGTTCGCTCAGCAGCGA
GGTGCTCGATCAGTTGCGGCATCTGCTCGGTCAGGGCCATCGGATTGGGGTTGAATTTGCCGATGTCCGCCGCTTCAAGG
CCAACTCGTGGGTGAGCGGCCCGGCAATCCAGGCGGCCCGCGAGCCGGAGGCGGCGGCGGCGCTGGAGACCGTGCTGCGC
GAGCACGCCGGGGAGTACGTGCGGCTGATTGGCATCGACCCCAAGGCCAAGCGCCGCGTGGCTGAACTGATCATCCAGCG
GCCCTGA

Upstream 100 bases:

>100_bases
GATCGGCATCATCGACACGGTCAGCGTCGACAACCGCCCGCTCTACAGCAAAAAGGACCAGTACCGCTAGCAGGTTGAAT
GCGTTTGGAGGAATCGGTTG

Downstream 100 bases:

>100_bases
ACCGATGGCTTCTCTGCCACCGCCCTGGGACGCCAACGCCTACACAAGCGGCGATGTGACCATCCATCCCGGTGCTGCCG
TCGCCTCCGGCGCTTTGCTG

Product: carbon dioxide concentrating mechanism protein

Products: cofactor [C]

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MVAQSRLAAPPTPWSRRLAEAAIDPSAYVHSFSQIIGDVRIGANVLVSPGTSIRADEGSPFHIGANTNIQDGVVMHGLQE
GRVNGDDGQSYSVWVGSNTSITHMALIHGPCYVGDDCFIGFRSTIFNARVGKGCIVMMHALVQDVEIPPGKYVPSGAVIT
SQQQANRLPDAQDIDIHFAKHVIGINDALRQGYRCAADIECIVPIRDESSPAAPGTNGKPTPKTHAQVSSMFMTSQTLDT
VRSLLAQGCRLAVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRVAETVIQRPDGK
PVEANSSSGKFAMTPAAPPGGSHRPGNGGLLSPEAAQQVQSLLSQGYRIGTEHADERRFRANSWQNCAPIAATREPEVLA
ALEGCLQEHAGEYVRIIGIDPKAKRRVAETIIQHPNGKQPSGGAAAPAQGYNTVSHRASGGGMLDAAVLDMVRSLLSQGH
RLGVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRVAETVIQRPNGRPVSGGAATA
STPAAGGYSPAPAHAPGPMRSSSLSSEVLDQLRHLLGQGHRIGVEFADVRRFKANSWVSGPAIQAAREPEAAAALETVLR
EHAGEYVRLIGIDPKAKRRVAELIIQRP

Sequences:

>Translated_668_residues
MVAQSRLAAPPTPWSRRLAEAAIDPSAYVHSFSQIIGDVRIGANVLVSPGTSIRADEGSPFHIGANTNIQDGVVMHGLQE
GRVNGDDGQSYSVWVGSNTSITHMALIHGPCYVGDDCFIGFRSTIFNARVGKGCIVMMHALVQDVEIPPGKYVPSGAVIT
SQQQANRLPDAQDIDIHFAKHVIGINDALRQGYRCAADIECIVPIRDESSPAAPGTNGKPTPKTHAQVSSMFMTSQTLDT
VRSLLAQGCRLAVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRVAETVIQRPDGK
PVEANSSSGKFAMTPAAPPGGSHRPGNGGLLSPEAAQQVQSLLSQGYRIGTEHADERRFRANSWQNCAPIAATREPEVLA
ALEGCLQEHAGEYVRIIGIDPKAKRRVAETIIQHPNGKQPSGGAAAPAQGYNTVSHRASGGGMLDAAVLDMVRSLLSQGH
RLGVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRVAETVIQRPNGRPVSGGAATA
STPAAGGYSPAPAHAPGPMRSSSLSSEVLDQLRHLLGQGHRIGVEFADVRRFKANSWVSGPAIQAAREPEAAAALETVLR
EHAGEYVRLIGIDPKAKRRVAELIIQRP
>Mature_668_residues
MVAQSRLAAPPTPWSRRLAEAAIDPSAYVHSFSQIIGDVRIGANVLVSPGTSIRADEGSPFHIGANTNIQDGVVMHGLQE
GRVNGDDGQSYSVWVGSNTSITHMALIHGPCYVGDDCFIGFRSTIFNARVGKGCIVMMHALVQDVEIPPGKYVPSGAVIT
SQQQANRLPDAQDIDIHFAKHVIGINDALRQGYRCAADIECIVPIRDESSPAAPGTNGKPTPKTHAQVSSMFMTSQTLDT
VRSLLAQGCRLAVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRVAETVIQRPDGK
PVEANSSSGKFAMTPAAPPGGSHRPGNGGLLSPEAAQQVQSLLSQGYRIGTEHADERRFRANSWQNCAPIAATREPEVLA
ALEGCLQEHAGEYVRIIGIDPKAKRRVAETIIQHPNGKQPSGGAAAPAQGYNTVSHRASGGGMLDAAVLDMVRSLLSQGH
RLGVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRVAETVIQRPNGRPVSGGAATA
STPAAGGYSPAPAHAPGPMRSSSLSSEVLDQLRHLLGQGHRIGVEFADVRRFKANSWVSGPAIQAAREPEAAAALETVLR
EHAGEYVRLIGIDPKAKRRVAELIIQRP

Specific function: The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator [H]

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87081681, Length=123, Percent_Identity=35.7723577235772, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017156
- InterPro:   IPR000894
- InterPro:   IPR011004 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: NA

Molecular weight: Translated: 71476; Mature: 71476

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAQSRLAAPPTPWSRRLAEAAIDPSAYVHSFSQIIGDVRIGANVLVSPGTSIRADEGSP
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCCC
FHIGANTNIQDGVVMHGLQEGRVNGDDGQSYSVWVGSNTSITHMALIHGPCYVGDDCFIG
EEECCCCCCCCCHHHHCHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECCEEECCCCEEH
FRSTIFNARVGKGCIVMMHALVQDVEIPPGKYVPSGAVITSQQQANRLPDAQDIDIHFAK
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHCCCCCCCCHHHHHH
HVIGINDALRQGYRCAADIECIVPIRDESSPAAPGTNGKPTPKTHAQVSSMFMTSQTLDT
HHHCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VRSLLAQGCRLAVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIG
HHHHHHCCCEEEEEHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEE
IDPKAKRRVAETVIQRPDGKPVEANSSSGKFAMTPAAPPGGSHRPGNGGLLSPEAAQQVQ
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
SLLSQGYRIGTEHADERRFRANSWQNCAPIAATREPEVLAALEGCLQEHAGEYVRIIGID
HHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
PKAKRRVAETIIQHPNGKQPSGGAAAPAQGYNTVSHRASGGGMLDAAVLDMVRSLLSQGH
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCC
RLGVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRV
EECCEECCCCCHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
AETVIQRPNGRPVSGGAATASTPAAGGYSPAPAHAPGPMRSSSLSSEVLDQLRHLLGQGH
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
RIGVEFADVRRFKANSWVSGPAIQAAREPEAAAALETVLREHAGEYVRLIGIDPKAKRRV
EEEEEHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
AELIIQRP
HHHHHCCC
>Mature Secondary Structure
MVAQSRLAAPPTPWSRRLAEAAIDPSAYVHSFSQIIGDVRIGANVLVSPGTSIRADEGSP
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCCC
FHIGANTNIQDGVVMHGLQEGRVNGDDGQSYSVWVGSNTSITHMALIHGPCYVGDDCFIG
EEECCCCCCCCCHHHHCHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECCEEECCCCEEH
FRSTIFNARVGKGCIVMMHALVQDVEIPPGKYVPSGAVITSQQQANRLPDAQDIDIHFAK
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHCCCCCCCCHHHHHH
HVIGINDALRQGYRCAADIECIVPIRDESSPAAPGTNGKPTPKTHAQVSSMFMTSQTLDT
HHHCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VRSLLAQGCRLAVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIG
HHHHHHCCCEEEEEHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEE
IDPKAKRRVAETVIQRPDGKPVEANSSSGKFAMTPAAPPGGSHRPGNGGLLSPEAAQQVQ
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
SLLSQGYRIGTEHADERRFRANSWQNCAPIAATREPEVLAALEGCLQEHAGEYVRIIGID
HHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
PKAKRRVAETIIQHPNGKQPSGGAAAPAQGYNTVSHRASGGGMLDAAVLDMVRSLLSQGH
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCC
RLGVEFADERRFRANSWVSGPAIQAAREPEVVSALENVLREHAGEYVRIIGIDPKAKRRV
EECCEECCCCCHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
AETVIQRPNGRPVSGGAATASTPAAGGYSPAPAHAPGPMRSSSLSSEVLDQLRHLLGQGH
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
RIGVEFADVRRFKANSWVSGPAIQAAREPEAAAALETVLREHAGEYVRLIGIDPKAKRRV
EEEEEHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
AELIIQRP
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: pre-cofactor [C]

Specific reaction: pre-cofactor = cofactor [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8491708 [H]