Click here to switch to the map view.

The map label for this gene is ybhR [H]

Identifier: 37521586

GI number: 37521586

Start: 2168590

End: 2169711

Strand: Direct

Name: ybhR [H]

Synonym: glr2017

Alternate gene names: 37521586

Gene position: 2168590-2169711 (Clockwise)

Preceding gene: 37521585

Following gene: 37521590

Centisome position: 46.55

GC content: 62.39

Gene sequence:

>1122_bases
ATGAAATTTCTCGAAAGCCTGCTTGAGAGCCGTTTGTGGGCATTGATGCGCAAAGAGACTACCCAGATTCTCAAAAACCG
GCAGCTGCTTTTTTTGCTGCTCTTTCCGCCCACCGTGCAGCTGATGATCTTCGGGTTTGCCCTGAGCCCCGACGTCAAGC
ACCTGAAGCTCGCCGTCGCCGACTACGCGGGCACCGCCACCAGCCGCGAACTGGTGGCCGCCTTTGCCAACAACGGCATC
TTCGATGTAGCGGCAGCTCCCAGCAGCCCACAGGCGGTCGCCGAGGCGGTGCGCACCGGCCGGGTCACCGCCGCCCTGGT
CATTCCGCCGGAGTTTCGGCGCGATCTGGCCCGGGGCCAGACTCCCGAGGTGCAGCTACTGATCGATGGCGTCGACGCCA
ACACCGCCGGTATCGCCAATGGCTACGCAGGCCAGATCGTCCGGCAGTTCGGCTACACGCTGTCCGGCAATGTGCCTCCG
GCGATCGACCCGATGGTGGCTATCCTCTACAACCCGGGCTTACGCAGCAGCTGGTTTTTTGTGCCCGGGGTCTTGGGTCT
GGTGCTCACCCTCACTTCCTCGCTGGTCTCCTCGGCCACGGTCGTGCGCGAAAAGGACGTGGGCACCCTCGAACAGCTCC
TCATGACCCCTGCGGCTGCCTGGGAGATTCTGCTCGCCAAACTGGCGCCGCTCTTTGTGCTGCTGGTGGGCGAGGCGCTG
CTGGCTCTGGGGATCGCCCGCCTGGTCTTTGGGGTGCCCTTTCTCGGCAACTTTTTGCTGTTCATGGTCTTCACCAGCCT
CTATATCTGTGTGGGTGTCGGCATCGGCATGATGCTCGCCACCGTCGCCCGCTCCCAGACCCAGGTGGTGCTCACCTCGT
TTTTCGTCAACTTGCCTCTGATCCAGCTGTCGGGCGCCATCGCTCCCATCGAGACGATGCCCGAATTTTTTCAGGTCGTC
TCGCTGGTCAACCCTTTGCGCCACTACATCGCCATCGTGCGGGGAATGCTCCTCAAGGGCGTCGGCTTCGAGGTGCTCTG
GCCGAACGTGCTGGTGCTGGGAGCCGCCGCCTTTTTGCTGTTGGCAATCAGCGCCAACCGCTTCCGTAAACAACTGGAGT
AG

Upstream 100 bases:

>100_bases
GGGGTGTGGTCCGCACCGCTGCTGCTCGCCGTGCTGGGGGGGGTGTTTTTTATGGCGAGCTTCCGCAACCTCAAACGCAT
GCAACTGCCGGGGTAGGGTT

Downstream 100 bases:

>100_bases
GTTCGATACCGACGGGCATATTCAACAGGTCGCGTCGGTCGACTCTTCGTGGCTTATCGTGCCGACCGGCCACGGAGGAG
CAGGGTGAATGTGCTGGCTG

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKFLESLLESRLWALMRKETTQILKNRQLLFLLLFPPTVQLMIFGFALSPDVKHLKLAVADYAGTATSRELVAAFANNGI
FDVAAAPSSPQAVAEAVRTGRVTAALVIPPEFRRDLARGQTPEVQLLIDGVDANTAGIANGYAGQIVRQFGYTLSGNVPP
AIDPMVAILYNPGLRSSWFFVPGVLGLVLTLTSSLVSSATVVREKDVGTLEQLLMTPAAAWEILLAKLAPLFVLLVGEAL
LALGIARLVFGVPFLGNFLLFMVFTSLYICVGVGIGMMLATVARSQTQVVLTSFFVNLPLIQLSGAIAPIETMPEFFQVV
SLVNPLRHYIAIVRGMLLKGVGFEVLWPNVLVLGAAAFLLLAISANRFRKQLE

Sequences:

>Translated_373_residues
MKFLESLLESRLWALMRKETTQILKNRQLLFLLLFPPTVQLMIFGFALSPDVKHLKLAVADYAGTATSRELVAAFANNGI
FDVAAAPSSPQAVAEAVRTGRVTAALVIPPEFRRDLARGQTPEVQLLIDGVDANTAGIANGYAGQIVRQFGYTLSGNVPP
AIDPMVAILYNPGLRSSWFFVPGVLGLVLTLTSSLVSSATVVREKDVGTLEQLLMTPAAAWEILLAKLAPLFVLLVGEAL
LALGIARLVFGVPFLGNFLLFMVFTSLYICVGVGIGMMLATVARSQTQVVLTSFFVNLPLIQLSGAIAPIETMPEFFQVV
SLVNPLRHYIAIVRGMLLKGVGFEVLWPNVLVLGAAAFLLLAISANRFRKQLE
>Mature_373_residues
MKFLESLLESRLWALMRKETTQILKNRQLLFLLLFPPTVQLMIFGFALSPDVKHLKLAVADYAGTATSRELVAAFANNGI
FDVAAAPSSPQAVAEAVRTGRVTAALVIPPEFRRDLARGQTPEVQLLIDGVDANTAGIANGYAGQIVRQFGYTLSGNVPP
AIDPMVAILYNPGLRSSWFFVPGVLGLVLTLTSSLVSSATVVREKDVGTLEQLLMTPAAAWEILLAKLAPLFVLLVGEAL
LALGIARLVFGVPFLGNFLLFMVFTSLYICVGVGIGMMLATVARSQTQVVLTSFFVNLPLIQLSGAIAPIETMPEFFQVV
SLVNPLRHYIAIVRGMLLKGVGFEVLWPNVLVLGAAAFLLLAISANRFRKQLE

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=340, Percent_Identity=31.1764705882353, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI226510979, Length=362, Percent_Identity=29.8342541436464, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI48994943, Length=368, Percent_Identity=29.0760869565217, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787011, Length=338, Percent_Identity=27.810650887574, Blast_Score=147, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24650855, Length=371, Percent_Identity=26.6846361185984, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24650853, Length=371, Percent_Identity=26.6846361185984, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI85725260, Length=415, Percent_Identity=23.6144578313253, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI85725262, Length=415, Percent_Identity=23.6144578313253, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40280; Mature: 40280

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLESLLESRLWALMRKETTQILKNRQLLFLLLFPPTVQLMIFGFALSPDVKHLKLAVA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHH
DYAGTATSRELVAAFANNGIFDVAAAPSSPQAVAEAVRTGRVTAALVIPPEFRRDLARGQ
HHCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHCCC
TPEVQLLIDGVDANTAGIANGYAGQIVRQFGYTLSGNVPPAIDPMVAILYNPGLRSSWFF
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHH
VPGVLGLVLTLTSSLVSSATVVREKDVGTLEQLLMTPAAAWEILLAKLAPLFVLLVGEAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LALGIARLVFGVPFLGNFLLFMVFTSLYICVGVGIGMMLATVARSQTQVVLTSFFVNLPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
IQLSGAIAPIETMPEFFQVVSLVNPLRHYIAIVRGMLLKGVGFEVLWPNVLVLGAAAFLL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LAISANRFRKQLE
HHHHHHHHHHHCC
>Mature Secondary Structure
MKFLESLLESRLWALMRKETTQILKNRQLLFLLLFPPTVQLMIFGFALSPDVKHLKLAVA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHH
DYAGTATSRELVAAFANNGIFDVAAAPSSPQAVAEAVRTGRVTAALVIPPEFRRDLARGQ
HHCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHCCC
TPEVQLLIDGVDANTAGIANGYAGQIVRQFGYTLSGNVPPAIDPMVAILYNPGLRSSWFF
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHH
VPGVLGLVLTLTSSLVSSATVVREKDVGTLEQLLMTPAAAWEILLAKLAPLFVLLVGEAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LALGIARLVFGVPFLGNFLLFMVFTSLYICVGVGIGMMLATVARSQTQVVLTSFFVNLPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
IQLSGAIAPIETMPEFFQVVSLVNPLRHYIAIVRGMLLKGVGFEVLWPNVLVLGAAAFLL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LAISANRFRKQLE
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]