BacMap

Definition	Gloeobacter violaceus PCC 7421 chromosome, complete genome.
Accession	NC_005125
Length	4,659,019

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The map label for this gene is ydaD [H]

Identifier: 37521574

GI number: 37521574

Start: 2154447

End: 2155319

Strand: Reverse

Name: ydaD [H]

Synonym: gll2005

Alternate gene names: 37521574

Gene position: 2155319-2154447 (Counterclockwise)

Preceding gene: 37521575

Following gene: 37521573

Centisome position: 46.26

GC content: 62.43

Gene sequence:

>873_bases
ATGGAGACTGAAGAATTTCGTCCGACAGCGGCCGAGATCCCGGGCCAACAGTTGCCCTACCCGGCAAGCCAGGAGGACAT
GACGCCCGCCCCCGACACGGACCTGGCAAACTACAAACCGGCGGGCAAGCTCGAAGGCAAAGCGGCGCTCGTCACCGGCG
GCGATTCGGGTATCGGCCGCGCCGTCGCCCTGGCCTTTGCGATGGAGGGGGCGCACGTCGCCATCTTCTACAACGAGAAC
GACGACGACGCCAAGCTCACAGCCGGTCTGGTCGAAGCCCAGGGCCGGCAGTGCCTCCTCATCAAAGGCGACGTGCGCGA
CCCGCAGCAGTGCCGCAGCGCCATCGAACAAACAGTCGTCAAGCTGGGCGGCCTCAATATTCTGGTCAACAACGCCGCTT
ACCAGAAGGCCCAGGAAAACTTCGAAGACATCACAGAAGAACAGTTCCGCCGCACGCTTGAGACCAATATCTTCGGCTAC
TTCCACATGGCCCAGGCGGCCCTTCCCTATCTCAACGCCGAGGACGCGATCATCAACACCGGCAGCATCGTCGGCCTGGT
CGGTAACGAAATCTTGATCGATTACTGCGCGAGCAAAGGGGCGATCCACGCCTTCACCAAGGCCCTCGCCCTCAACCTCG
CCAAACGCAAAATCCGGGTGAACGCCGTCGCCCCCGGCCCGGTCTGGACTCCGAACATTCCGGCGACAATGCCCCCCGAG
GAAGTGGACAACTTCGGCCACGAAGTGGCGATGGAGCGCCCCGGACAGCCGGAAGAACTGGCACCGGTCTATGTGTTCCT
GGCTTCAAAAGACGCGAGCTTTGTCACCGGCAGCATCTTCGAAGTGACCGGCGGCAAGCTCTCCAGCGGGTGA

Upstream 100 bases:

>100_bases
GCTGTATGTTTGGCTTATCGACCCTCAAAATCCTCTTTAGAATGAAATAGCTCTGGCCCATAGCCCGGCCAGGCAGTCGC
TTACCGTCACGGAGTTTGAC

Downstream 100 bases:

>100_bases
CGGGTGCGGCGAACCCGTCACCTGCCCACCCAAACGAGAGCCGTCGATGCAACCGGATTCCTATCCTCCCGAAAGTGTGC
GCCGCCTGCTTGCCACGCCC

Product: oxidoreductase

Products: NA

Alternate protein names: GSP39 [H]

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
METEEFRPTAAEIPGQQLPYPASQEDMTPAPDTDLANYKPAGKLEGKAALVTGGDSGIGRAVALAFAMEGAHVAIFYNEN
DDDAKLTAGLVEAQGRQCLLIKGDVRDPQQCRSAIEQTVVKLGGLNILVNNAAYQKAQENFEDITEEQFRRTLETNIFGY
FHMAQAALPYLNAEDAIINTGSIVGLVGNEILIDYCASKGAIHAFTKALALNLAKRKIRVNAVAPGPVWTPNIPATMPPE
EVDNFGHEVAMERPGQPEELAPVYVFLASKDASFVTGSIFEVTGGKLSSG

Sequences:

>Translated_290_residues
METEEFRPTAAEIPGQQLPYPASQEDMTPAPDTDLANYKPAGKLEGKAALVTGGDSGIGRAVALAFAMEGAHVAIFYNEN
DDDAKLTAGLVEAQGRQCLLIKGDVRDPQQCRSAIEQTVVKLGGLNILVNNAAYQKAQENFEDITEEQFRRTLETNIFGY
FHMAQAALPYLNAEDAIINTGSIVGLVGNEILIDYCASKGAIHAFTKALALNLAKRKIRVNAVAPGPVWTPNIPATMPPE
EVDNFGHEVAMERPGQPEELAPVYVFLASKDASFVTGSIFEVTGGKLSSG
>Mature_290_residues
METEEFRPTAAEIPGQQLPYPASQEDMTPAPDTDLANYKPAGKLEGKAALVTGGDSGIGRAVALAFAMEGAHVAIFYNEN
DDDAKLTAGLVEAQGRQCLLIKGDVRDPQQCRSAIEQTVVKLGGLNILVNNAAYQKAQENFEDITEEQFRRTLETNIFGY
FHMAQAALPYLNAEDAIINTGSIVGLVGNEILIDYCASKGAIHAFTKALALNLAKRKIRVNAVAPGPVWTPNIPATMPPE
EVDNFGHEVAMERPGQPEELAPVYVFLASKDASFVTGSIFEVTGGKLSSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=35.2422907488987, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=33.596837944664, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=33.2, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI19923817, Length=270, Percent_Identity=29.2592592592593, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=34.4398340248963, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI10190704, Length=272, Percent_Identity=27.9411764705882, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI31542939, Length=214, Percent_Identity=35.0467289719626, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=32.9317269076305, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=32.1285140562249, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=28.6821705426357, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=34.1040462427746, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=31.7647058823529, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254986, Length=194, Percent_Identity=30.4123711340206, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI4504505, Length=256, Percent_Identity=26.953125, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=33.5051546391753, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=215, Percent_Identity=24.1860465116279, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=213, Percent_Identity=27.6995305164319, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32455239, Length=179, Percent_Identity=27.3743016759777, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031765, Length=179, Percent_Identity=27.3743016759777, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503301, Length=258, Percent_Identity=26.7441860465116, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=30.4812834224599, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40807363, Length=220, Percent_Identity=26.8181818181818, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4504503, Length=201, Percent_Identity=29.3532338308458, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=277, Percent_Identity=42.9602888086643, Blast_Score=221, Evalue=3e-59,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=38.0566801619433, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=34.6456692913386, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.8367346938775, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=33.1967213114754, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=32, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=31.9672131147541, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=29.5546558704453, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=32.3886639676113, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=30.5220883534137, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786701, Length=211, Percent_Identity=29.3838862559242, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787526, Length=255, Percent_Identity=25.4901960784314, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=26.0700389105058, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=26.8482490272374, Blast_Score=64, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=36.1788617886179, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=38.0566801619433, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=30.5220883534137, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=29.9212598425197, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=29.8039215686275, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=29.9242424242424, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=29.8387096774194, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=29.8449612403101, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=29.9610894941634, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=32.3076923076923, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.5343511450382, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=251, Percent_Identity=30.2788844621514, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=33.587786259542, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=29.9610894941634, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=27.6264591439689, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=34.2205323193916, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=273, Percent_Identity=29.3040293040293, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=29.6577946768061, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=30.2564102564103, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=233, Percent_Identity=31.7596566523605, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=29.6992481203008, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=31.0861423220974, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=30.1158301158301, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=26.9961977186312, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.9242424242424, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=233, Percent_Identity=30.4721030042918, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=25.4681647940075, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=27.8810408921933, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=29.4339622641509, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=263, Percent_Identity=31.5589353612167, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=138, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=226, Percent_Identity=25.6637168141593, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=241, Percent_Identity=25.3112033195021, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=173, Percent_Identity=27.7456647398844, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=254, Percent_Identity=26.7716535433071, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.1904761904762, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=31.5, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=34.8, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=33.4677419354839, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=34.4, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=33.1983805668016, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=30.6451612903226, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=32.6612903225806, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=31.5573770491803, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=31.6, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=28.3505154639175, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=26.5625, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=26.8041237113402, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581726, Length=253, Percent_Identity=25.296442687747, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640492, Length=179, Percent_Identity=26.2569832402235, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24665243, Length=195, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221331218, Length=195, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31081; Mature: 31081

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METEEFRPTAAEIPGQQLPYPASQEDMTPAPDTDLANYKPAGKLEGKAALVTGGDSGIGR
CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
AVALAFAMEGAHVAIFYNENDDDAKLTAGLVEAQGRQCLLIKGDVRDPQQCRSAIEQTVV
HHHHHHEECCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
KLGGLNILVNNAAYQKAQENFEDITEEQFRRTLETNIFGYFHMAQAALPYLNAEDAIINT
HHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
GSIVGLVGNEILIDYCASKGAIHAFTKALALNLAKRKIRVNAVAPGPVWTPNIPATMPPE
CCEEEECCCCEEEEHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCHH
EVDNFGHEVAMERPGQPEELAPVYVFLASKDASFVTGSIFEVTGGKLSSG
HHHHCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEECEEEEECCCCCCCC
>Mature Secondary Structure
METEEFRPTAAEIPGQQLPYPASQEDMTPAPDTDLANYKPAGKLEGKAALVTGGDSGIGR
CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
AVALAFAMEGAHVAIFYNENDDDAKLTAGLVEAQGRQCLLIKGDVRDPQQCRSAIEQTVV
HHHHHHEECCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
KLGGLNILVNNAAYQKAQENFEDITEEQFRRTLETNIFGYFHMAQAALPYLNAEDAIINT
HHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
GSIVGLVGNEILIDYCASKGAIHAFTKALALNLAKRKIRVNAVAPGPVWTPNIPATMPPE
CCEEEECCCCEEEEHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCHH
EVDNFGHEVAMERPGQPEELAPVYVFLASKDASFVTGSIFEVTGGKLSSG
HHHHCCHHHHHCCCCCCCCCCEEEEEEECCCCCEEECEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]