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The map label for this gene is yohD [C]

Identifier: 37521078

GI number: 37521078

Start: 1627753

End: 1628418

Strand: Reverse

Name: yohD [C]

Synonym: gll1509

Alternate gene names: 37521078

Gene position: 1628418-1627753 (Counterclockwise)

Preceding gene: 37521081

Following gene: 37521074

Centisome position: 34.95

GC content: 58.11

Gene sequence:

>666_bases
ATGATTGAGCAACTGGCGGAGTCCATTCAACACTTTCTTGAGTCCAACGGTCCACTCGGTTACCTGCTGATCGCGGGAAT
CATCTTTCTTGAAAATTCCGGCTTGCCTCTGCCCGGTGAGACGACGCTGATCCTGGCTTCGGTGCTCGCTTCTAAGGAGA
TCCTCGCCTTTCCGCTGGTGCTGATTGCAGCCATCTGCGGCGCCATCTTGGGCGACAACATGGGCTACTTCATCGGTCGG
CGCTTCGGGCGCGACTTGGTGCTCAAGTATGGCAAAGTCTTTGGGCTGACCCAGGACAAGTTCGACCGCGCCGAGGCAGC
TTTTTTGAAAAACAGCGCCTGGGCGGTGTTTATTGGACGGTTTATCGTGCTGTTGCGCATCCTGGCGGGTCCTCTGGCGG
GGATCACCCGCATGCCCTGGCCGAAGTTTGTGCTTTTTAATGCGATGGGCGCGTTCGCCTGGGGCGGGGCGATCGGCACT
GCCGCTTACTTTTTTGGGGTGGCGGTGCTCAAGTTTTTTGAGGGCATCGGTATCTGGGGGCTGATTTTGTTGGTGGTCGC
CATCATCGCCTTTGGGGTCGTCCGCCACTTCATGGACGAGCGCGCCGAGCACAAAGCCGCCAAAAAAGCCAAGGTTGAGC
CGGAGCAGACCACCACCACCCGTTAG

Upstream 100 bases:

>100_bases
TTGACTTGAGTGCGAAACTGAAAAACCGTGGTGGGGCAATGGCCTGTAAGATTGAGAGGGGTGCGACCGCTGCAACCATC
TTTCCCAGACGGCAGGTACG

Downstream 100 bases:

>100_bases
TAACGTTCCGGCCGACAAAGATTTGCCGCGACTGAGAGTGGGGTTCGCCTTTTGCAAGCCCACTTTACTCCGCCGGGGTG
AGCACTGACTCGCTGCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIEQLAESIQHFLESNGPLGYLLIAGIIFLENSGLPLPGETTLILASVLASKEILAFPLVLIAAICGAILGDNMGYFIGR
RFGRDLVLKYGKVFGLTQDKFDRAEAAFLKNSAWAVFIGRFIVLLRILAGPLAGITRMPWPKFVLFNAMGAFAWGGAIGT
AAYFFGVAVLKFFEGIGIWGLILLVVAIIAFGVVRHFMDERAEHKAAKKAKVEPEQTTTTR

Sequences:

>Translated_221_residues
MIEQLAESIQHFLESNGPLGYLLIAGIIFLENSGLPLPGETTLILASVLASKEILAFPLVLIAAICGAILGDNMGYFIGR
RFGRDLVLKYGKVFGLTQDKFDRAEAAFLKNSAWAVFIGRFIVLLRILAGPLAGITRMPWPKFVLFNAMGAFAWGGAIGT
AAYFFGVAVLKFFEGIGIWGLILLVVAIIAFGVVRHFMDERAEHKAAKKAKVEPEQTTTTR
>Mature_221_residues
MIEQLAESIQHFLESNGPLGYLLIAGIIFLENSGLPLPGETTLILASVLASKEILAFPLVLIAAICGAILGDNMGYFIGR
RFGRDLVLKYGKVFGLTQDKFDRAEAAFLKNSAWAVFIGRFIVLLRILAGPLAGITRMPWPKFVLFNAMGAFAWGGAIGT
AAYFFGVAVLKFFEGIGIWGLILLVVAIIAFGVVRHFMDERAEHKAAKKAKVEPEQTTTTR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=125, Percent_Identity=34.4, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789481, Length=149, Percent_Identity=31.5436241610738, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788656, Length=133, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789384, Length=146, Percent_Identity=30.1369863013699, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24064; Mature: 24064

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQLAESIQHFLESNGPLGYLLIAGIIFLENSGLPLPGETTLILASVLASKEILAFPLV
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LIAAICGAILGDNMGYFIGRRFGRDLVLKYGKVFGLTQDKFDRAEAAFLKNSAWAVFIGR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHH
FIVLLRILAGPLAGITRMPWPKFVLFNAMGAFAWGGAIGTAAYFFGVAVLKFFEGIGIWG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LILLVVAIIAFGVVRHFMDERAEHKAAKKAKVEPEQTTTTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIEQLAESIQHFLESNGPLGYLLIAGIIFLENSGLPLPGETTLILASVLASKEILAFPLV
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LIAAICGAILGDNMGYFIGRRFGRDLVLKYGKVFGLTQDKFDRAEAAFLKNSAWAVFIGR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHH
FIVLLRILAGPLAGITRMPWPKFVLFNAMGAFAWGGAIGTAAYFFGVAVLKFFEGIGIWG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LILLVVAIIAFGVVRHFMDERAEHKAAKKAKVEPEQTTTTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]