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The map label for this gene is rimM

Identifier: 37521074

GI number: 37521074

Start: 1619374

End: 1619919

Strand: Reverse

Name: rimM

Synonym: gll1505

Alternate gene names: 37521074

Gene position: 1619919-1619374 (Counterclockwise)

Preceding gene: 37521078

Following gene: 37521073

Centisome position: 34.77

GC content: 65.02

Gene sequence:

>546_bases
GTGCAGCAATGGCTTGAGATCGGCAAAGTCGTCGCTGCCCAGGGTCTGCGCGGCGAGGTGCGCGTGCAGCCGGCGACGGA
CTTTGCCGAGCGGCTCACCCGCCCGGGAGCGCGCCTGGTGGGCCGCTCGCTCGACGATGGCCGGGTGTTCCGATTGCAAA
GTGGCCGGGCTATACCGGGGAAGGATCTGTTTGTCTGCCGCTTCGAGGGTGTCGAGGAGCGCAACGCCGCCGAAAAGCTG
GTGGGCTCCACCCTCTGGATCGGCGCCGCCGAGCGGCCGGTGCTGGCTGCGGGCGAATTCTGGCTGCCGGATCTGATGGG
AGTGAGGGTATTTCGTCAGGATACCGGTGAAGCAATCGGTGAGGTCAGTGATATGACGCGGGCGGGCAATGATTTGCTGG
TCATTCGATTGAGCGGCGGGAAGACAGTGATGGTGCCCTTTGTCCATGCACTGGTGCCGGTGGTCGATCTGGAAGCGGGG
CGCATCGAGGTGGTTGCGATACCGGGTCTGCTCGATCCGGAGGCGGCGGAAGCCGACGAAGCGTAA

Upstream 100 bases:

>100_bases
TATACCGTCAACCCTGCCCGAACCGTAAGGCCAAACCCCAAATTCTCCACCGGTCTCGGGGGCGTTTGCTTCAATAGATA
GCAGCGCGCCAAAACGCAAC

Downstream 100 bases:

>100_bases
AATTGCCGCTGCCGGAGGCCAGGCGCCCCGGTCTTGGGCGGCATGTCAACGAATGCCAAAATTTTGTATCGAATCGGACA
TTTATTAATGTCGAGAAGAC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MQQWLEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPGKDLFVCRFEGVEERNAAEKL
VGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIGEVSDMTRAGNDLLVIRLSGGKTVMVPFVHALVPVVDLEAG
RIEVVAIPGLLDPEAAEADEA

Sequences:

>Translated_181_residues
MQQWLEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPGKDLFVCRFEGVEERNAAEKL
VGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIGEVSDMTRAGNDLLVIRLSGGKTVMVPFVHALVPVVDLEAG
RIEVVAIPGLLDPEAAEADEA
>Mature_181_residues
MQQWLEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPGKDLFVCRFEGVEERNAAEKL
VGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIGEVSDMTRAGNDLLVIRLSGGKTVMVPFVHALVPVVDLEAG
RIEVVAIPGLLDPEAAEADEA

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=171, Percent_Identity=29.2397660818713, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_GLOVI (Q7NKH3)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924451.1
- ProteinModelPortal:   Q7NKH3
- SMR:   Q7NKH3
- GeneID:   2598683
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:gll1505
- NMPDR:   fig|251221.1.peg.1505
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   GVIO251221:GLL1505-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19542; Mature: 19542

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQWLEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPG
CCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCCC
KDLFVCRFEGVEERNAAEKLVGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIG
CCEEEEEECCCCHHHHHHHHHCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH
EVSDMTRAGNDLLVIRLSGGKTVMVPFVHALVPVVDLEAGRIEVVAIPGLLDPEAAEADE
HHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCCCCCC
A
C
>Mature Secondary Structure
MQQWLEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPG
CCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCCC
KDLFVCRFEGVEERNAAEKLVGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIG
CCEEEEEECCCCHHHHHHHHHCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH
EVSDMTRAGNDLLVIRLSGGKTVMVPFVHALVPVVDLEAGRIEVVAIPGLLDPEAAEADE
HHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292