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The map label for this gene is secY [H]

Identifier: 37520962

GI number: 37520962

Start: 1495526

End: 1496827

Strand: Reverse

Name: secY [H]

Synonym: gvip198

Alternate gene names: 37520962

Gene position: 1496827-1495526 (Counterclockwise)

Preceding gene: 37520963

Following gene: 37520961

Centisome position: 32.13

GC content: 59.68

Gene sequence:

>1302_bases
ATGGAACGAGGTCGCGAAAGGCAACTGTCGGCGCAGGAAACCTTTGCCCAGATGGCGTCAGCCTCCGGGTTACGCCGCCG
CTTGCTGTTCACCCTGGGACTACTGGTACTCTCACGCATCGGTATCTACATCCCACTGCCGGAGATCAACCAGGCCGCCT
TCCAGCAGGCTACTCAGAATAACGCCATCATCGGCTTTTTGAACATTTTTGCGGGCGGCGGTTTCACGACTCTGGGCGTC
TTCATGCTGGGCATCTTGCCCTACATCAACGCCAGCATCATCATGCAGCTGCTGGTGCCGGTTTTCCCCAAACTCGAAGA
CCTTCAAAAGAACGAAGGCGAGCAGGGACGGCGCCAGATCGCCCAGTACACGCGCTATCTGGCCCTTGGCTGGGCGATTA
TCCAGAGCATCGGTGTGGCCATTTACATCAAGCCCTTTGTTGCCGACTGGAGTCCGCTGTTTGTCATCCAGACCACCCTG
GCACTCACCGCCGGGGCGATCTTCGTAATGTGGCTGGGAGAACTGATCACCGAAAAAGGAATCGGCAACGGCGCCTCGCT
GCTCATTTTTGTGAGCATCGTCTCCAGCTTGCCCACCGCCTTCAGCCAGACCTTCCAGCTGTTGCAGGCCGACTCCTCGC
GGGTGGCGGGGGTGGTCGTGCTGCTGCTGGTTTTCCTCGCCATGATCGTGGGGATCGTCTTTGTGCAGGAGGGCACCCGC
CGCATCCCGATTATCTCGGCCCGCCGTCAGGTGGGACCGCGCCGCCAACAGTACCAGCAGCAGCAGACGAGCTACCTGCC
TCTGCGTGTCAACCAGGGCGGCGTCATGCCGATCATCTTCGCCTCCTCGCTGCTGTACCTGCCTCTCACCTTTGCCCAGT
TCGCCCGCAACGCCACCGTCGATCAGGTGGTCAACGCCATTTCCAGCGGCTGGATCCACAACATCCTCTATCTGGTGTTG
ATCCTGTTTTTCAGCTTCTTCTACGCGACGCTCATCATCAACCCCGAGGATGTCTCCAAGAACCTCAAGCGCATGGGTTC
GAGCATTCCGGGCGTGCGCCCCGGCACCGCCACTTCCGAATACATCGCCAAGGTGATGAACCGGCTGACTTTTCTGGGGG
CGATTTTCCTGTCGGCGGTGGCGATCATTCCGACCTTTGTCGAGCAGGGGACCGGCATCACCACCTTTAACGGTCTGGGG
GCCACCTCGCTGTTGATTCTGGTGGGCGTCGCCATCGACACCGTGCGCCAGATCCAGACCTACGTGATCTCCCAGCGCTA
CGAAGGCATGGTGAAACGCTAG

Upstream 100 bases:

>100_bases
TCGCTGTCTAACAACCCGCGCACCTGGGCTGCGGGTTACTATGATTGGATAAGTTTGCAGTCAACTCAGCCGTAGCAAAG
GCGCGGGAGGGTGCGGTTCG

Downstream 100 bases:

>100_bases
TGGCCACTCGACGGCTGATGTTGCTCGGCGCTCCGGGAGCGGGCAAGGGTACCCAGGCCCAACTGCTCATGCAGGAGCTG
GGACTGCCACAGGTTTCAAC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MERGRERQLSAQETFAQMASASGLRRRLLFTLGLLVLSRIGIYIPLPEINQAAFQQATQNNAIIGFLNIFAGGGFTTLGV
FMLGILPYINASIIMQLLVPVFPKLEDLQKNEGEQGRRQIAQYTRYLALGWAIIQSIGVAIYIKPFVADWSPLFVIQTTL
ALTAGAIFVMWLGELITEKGIGNGASLLIFVSIVSSLPTAFSQTFQLLQADSSRVAGVVVLLLVFLAMIVGIVFVQEGTR
RIPIISARRQVGPRRQQYQQQQTSYLPLRVNQGGVMPIIFASSLLYLPLTFAQFARNATVDQVVNAISSGWIHNILYLVL
ILFFSFFYATLIINPEDVSKNLKRMGSSIPGVRPGTATSEYIAKVMNRLTFLGAIFLSAVAIIPTFVEQGTGITTFNGLG
ATSLLILVGVAIDTVRQIQTYVISQRYEGMVKR

Sequences:

>Translated_433_residues
MERGRERQLSAQETFAQMASASGLRRRLLFTLGLLVLSRIGIYIPLPEINQAAFQQATQNNAIIGFLNIFAGGGFTTLGV
FMLGILPYINASIIMQLLVPVFPKLEDLQKNEGEQGRRQIAQYTRYLALGWAIIQSIGVAIYIKPFVADWSPLFVIQTTL
ALTAGAIFVMWLGELITEKGIGNGASLLIFVSIVSSLPTAFSQTFQLLQADSSRVAGVVVLLLVFLAMIVGIVFVQEGTR
RIPIISARRQVGPRRQQYQQQQTSYLPLRVNQGGVMPIIFASSLLYLPLTFAQFARNATVDQVVNAISSGWIHNILYLVL
ILFFSFFYATLIINPEDVSKNLKRMGSSIPGVRPGTATSEYIAKVMNRLTFLGAIFLSAVAIIPTFVEQGTGITTFNGLG
ATSLLILVGVAIDTVRQIQTYVISQRYEGMVKR
>Mature_433_residues
MERGRERQLSAQETFAQMASASGLRRRLLFTLGLLVLSRIGIYIPLPEINQAAFQQATQNNAIIGFLNIFAGGGFTTLGV
FMLGILPYINASIIMQLLVPVFPKLEDLQKNEGEQGRRQIAQYTRYLALGWAIIQSIGVAIYIKPFVADWSPLFVIQTTL
ALTAGAIFVMWLGELITEKGIGNGASLLIFVSIVSSLPTAFSQTFQLLQADSSRVAGVVVLLLVFLAMIVGIVFVQEGTR
RIPIISARRQVGPRRQQYQQQQTSYLPLRVNQGGVMPIIFASSLLYLPLTFAQFARNATVDQVVNAISSGWIHNILYLVL
ILFFSFFYATLIINPEDVSKNLKRMGSSIPGVRPGTATSEYIAKVMNRLTFLGAIFLSAVAIIPTFVEQGTGITTFNGLG
ATSLLILVGVAIDTVRQIQTYVISQRYEGMVKR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=428, Percent_Identity=40.8878504672897, Blast_Score=270, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47610; Mature: 47610

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERGRERQLSAQETFAQMASASGLRRRLLFTLGLLVLSRIGIYIPLPEINQAAFQQATQN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCC
NAIIGFLNIFAGGGFTTLGVFMLGILPYINASIIMQLLVPVFPKLEDLQKNEGEQGRRQI
CCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHH
AQYTRYLALGWAIIQSIGVAIYIKPFVADWSPLFVIQTTLALTAGAIFVMWLGELITEKG
HHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGNGASLLIFVSIVSSLPTAFSQTFQLLQADSSRVAGVVVLLLVFLAMIVGIVFVQEGTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RIPIISARRQVGPRRQQYQQQQTSYLPLRVNQGGVMPIIFASSLLYLPLTFAQFARNATV
CCCEEHHHHHCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
DQVVNAISSGWIHNILYLVLILFFSFFYATLIINPEDVSKNLKRMGSSIPGVRPGTATSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHH
YIAKVMNRLTFLGAIFLSAVAIIPTFVEQGTGITTFNGLGATSLLILVGVAIDTVRQIQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
YVISQRYEGMVKR
HHHHHHHHHHCCC
>Mature Secondary Structure
MERGRERQLSAQETFAQMASASGLRRRLLFTLGLLVLSRIGIYIPLPEINQAAFQQATQN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHCC
NAIIGFLNIFAGGGFTTLGVFMLGILPYINASIIMQLLVPVFPKLEDLQKNEGEQGRRQI
CCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHH
AQYTRYLALGWAIIQSIGVAIYIKPFVADWSPLFVIQTTLALTAGAIFVMWLGELITEKG
HHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGNGASLLIFVSIVSSLPTAFSQTFQLLQADSSRVAGVVVLLLVFLAMIVGIVFVQEGTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RIPIISARRQVGPRRQQYQQQQTSYLPLRVNQGGVMPIIFASSLLYLPLTFAQFARNATV
CCCEEHHHHHCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
DQVVNAISSGWIHNILYLVLILFFSFFYATLIINPEDVSKNLKRMGSSIPGVRPGTATSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHH
YIAKVMNRLTFLGAIFLSAVAIIPTFVEQGTGITTFNGLGATSLLILVGVAIDTVRQIQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
YVISQRYEGMVKR
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]