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The map label for this gene is ycf24 [C]

Identifier: 37520939

GI number: 37520939

Start: 1465682

End: 1467130

Strand: Direct

Name: ycf24 [C]

Synonym: gvip196

Alternate gene names: 37520939

Gene position: 1465682-1467130 (Clockwise)

Preceding gene: 37520938

Following gene: 37520940

Centisome position: 31.46

GC content: 59.9

Gene sequence:

>1449_bases
ATGACCACTTCGACCCAGACGATTGAACAACTGGCGGGCAAGGAGTACCAGTACGGATTTGTCACCGACATCGAGCAGGA
AACCGTCCCGCCCGGATTGTCGGAGGAGGTGATCCGGCTGATTTCTGCTAAGAAGCAGGAGCCTGAGTTCATGCTCGAAT
GGCGGCTGAAGGCTTACCGCCACTGGCTTTCGATGACGACACCCGAGTGGGCCAACGTGCACTACCCGCCGATTGATTAT
CAAAATATCGTCTACTACGCCGCCCTCAAGCCCAAAACCGACGGTCCCAAGAGTCTGGACGAGGTGGACCCGGAGCTGTT
GCGCACCTACGAAAAGCTGGGTATTCCTTTGCAGGAGCGCGCGGCCCTGGCCGGGGTGGCGGTCGACGCGGTTTTCGACA
GCGTCTCGGTGGCCACAACCTTCAAAGACAAGCTCGGGGCGATGGGCATTATCTTCTGCTCGTTTTCTGAGGCGGTGCGC
GAGCATCCCGAACTGGTGCGCAAGTACCTCGGATCGGTGGTGCCGACCGGCGACAATTTCTACGCCGCGCTCAACTCGGC
AGTCTTCACCGACGGCTCGTTCGTCTACGTGCCCAAGGGGGTGCGCTGCCCGATGGAGTTGTCTACTTATTTTCGCATCA
ACGCCAAGAACACCGGCCAGTTCGAGCGCACGCTGATCATCGCCGACGCGGGCAGCTACGTGAGCTATCTCGAAGGCTGC
ACCGCCCCGATGCGCGACGAAAATCAGCTGCACGCGGCGGTGGTGGAGTTGATTGCCCACGACGATGCCACCATCAAGTA
CTCGACCGTCCAGAACTGGTACCCGGGCGACAAAGAGGGCAAAGGCGGCATCTACAACTTCGTTACCAAGCGGGGCCGCT
GCGAGGGCCGCAACTCCAAGATTTCCTGGACGCAGGTGGAGACGGGTTCGGCCATCACCTGGAAGTACCCGAGCTGCATC
CTCAAGGGCGACAACTCCGTGGGCGAGTTCTATTCGGTGGCGCTCACCAACAACTACCAGCAGGCCGATACCGGCACTAA
GATGATCCACATCGGCAAGAACACCAAAAGCACGATCGTCTCCAAGGGCATCTCGGCGGGCCACGGCCAGAACACCTACC
GCGGGGCGGTGAAGATCTTGAGCGGTGCCGATGGGGCGCGTAACTACTCGCAGTGCGACTCGCTGTTGATTGGCGAAGAT
TGTGGGGCGCACACGTTTCCGTATATCGACGTGCAGAACCCGACGGCGCGCATGGAGCACGAGGCGTCCACCTCCAAAAT
CGGCGAGGACCAGATTTTCTACTGCAACCAGCGGGGCATCGCCACCGAGGATGCCGTGTCGATGATCGTCAACGGCTTCT
GCAAAGAAGTGTTCCGCGAGTTGCCGATGGAATTTGCGGTCGAAGCCCAGAAGCTGCTCGAAGTCAGCCTCGAAGGCAGC
GTCGGCTAA

Upstream 100 bases:

>100_bases
GATTGCTCCCTGGCCTCAGGAACTACCCGTCCTGTCCCACGCCGCACGCCCGGTGCCGGCGGCTGTCCAGACACCCCTAC
GCTGATCTTACGGAGCGACC

Downstream 100 bases:

>100_bases
ATGGAGAACCACCCTATGCTCGAAATTACCAACCTGCAGGCGCGGGTCGAAGGCAAAGCGATCCTCAAAGGAATAGATCT
GACCGTCCGCCCCGGCGAGG

Product: cysteine desulfurase activator complex subunit SufB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTTSTQTIEQLAGKEYQYGFVTDIEQETVPPGLSEEVIRLISAKKQEPEFMLEWRLKAYRHWLSMTTPEWANVHYPPIDY
QNIVYYAALKPKTDGPKSLDEVDPELLRTYEKLGIPLQERAALAGVAVDAVFDSVSVATTFKDKLGAMGIIFCSFSEAVR
EHPELVRKYLGSVVPTGDNFYAALNSAVFTDGSFVYVPKGVRCPMELSTYFRINAKNTGQFERTLIIADAGSYVSYLEGC
TAPMRDENQLHAAVVELIAHDDATIKYSTVQNWYPGDKEGKGGIYNFVTKRGRCEGRNSKISWTQVETGSAITWKYPSCI
LKGDNSVGEFYSVALTNNYQQADTGTKMIHIGKNTKSTIVSKGISAGHGQNTYRGAVKILSGADGARNYSQCDSLLIGED
CGAHTFPYIDVQNPTARMEHEASTSKIGEDQIFYCNQRGIATEDAVSMIVNGFCKEVFRELPMEFAVEAQKLLEVSLEGS
VG

Sequences:

>Translated_482_residues
MTTSTQTIEQLAGKEYQYGFVTDIEQETVPPGLSEEVIRLISAKKQEPEFMLEWRLKAYRHWLSMTTPEWANVHYPPIDY
QNIVYYAALKPKTDGPKSLDEVDPELLRTYEKLGIPLQERAALAGVAVDAVFDSVSVATTFKDKLGAMGIIFCSFSEAVR
EHPELVRKYLGSVVPTGDNFYAALNSAVFTDGSFVYVPKGVRCPMELSTYFRINAKNTGQFERTLIIADAGSYVSYLEGC
TAPMRDENQLHAAVVELIAHDDATIKYSTVQNWYPGDKEGKGGIYNFVTKRGRCEGRNSKISWTQVETGSAITWKYPSCI
LKGDNSVGEFYSVALTNNYQQADTGTKMIHIGKNTKSTIVSKGISAGHGQNTYRGAVKILSGADGARNYSQCDSLLIGED
CGAHTFPYIDVQNPTARMEHEASTSKIGEDQIFYCNQRGIATEDAVSMIVNGFCKEVFRELPMEFAVEAQKLLEVSLEGS
VG
>Mature_481_residues
TTSTQTIEQLAGKEYQYGFVTDIEQETVPPGLSEEVIRLISAKKQEPEFMLEWRLKAYRHWLSMTTPEWANVHYPPIDYQ
NIVYYAALKPKTDGPKSLDEVDPELLRTYEKLGIPLQERAALAGVAVDAVFDSVSVATTFKDKLGAMGIIFCSFSEAVRE
HPELVRKYLGSVVPTGDNFYAALNSAVFTDGSFVYVPKGVRCPMELSTYFRINAKNTGQFERTLIIADAGSYVSYLEGCT
APMRDENQLHAAVVELIAHDDATIKYSTVQNWYPGDKEGKGGIYNFVTKRGRCEGRNSKISWTQVETGSAITWKYPSCIL
KGDNSVGEFYSVALTNNYQQADTGTKMIHIGKNTKSTIVSKGISAGHGQNTYRGAVKILSGADGARNYSQCDSLLIGEDC
GAHTFPYIDVQNPTARMEHEASTSKIGEDQIFYCNQRGIATEDAVSMIVNGFCKEVFRELPMEFAVEAQKLLEVSLEGSV
G

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=481, Percent_Identity=64.8648648648649, Blast_Score=664, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 53368; Mature: 53237

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSTQTIEQLAGKEYQYGFVTDIEQETVPPGLSEEVIRLISAKKQEPEFMLEWRLKAYR
CCCCHHHHHHHCCCCCCCCCEECCCHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
HWLSMTTPEWANVHYPPIDYQNIVYYAALKPKTDGPKSLDEVDPELLRTYEKLGIPLQER
HHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCHHHH
AALAGVAVDAVFDSVSVATTFKDKLGAMGIIFCSFSEAVREHPELVRKYLGSVVPTGDNF
HHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCH
YAALNSAVFTDGSFVYVPKGVRCPMELSTYFRINAKNTGQFERTLIIADAGSYVSYLEGC
HHHHCCCEEECCCEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHCC
TAPMRDENQLHAAVVELIAHDDATIKYSTVQNWYPGDKEGKGGIYNFVTKRGRCEGRNSK
CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
ISWTQVETGSAITWKYPSCILKGDNSVGEFYSVALTNNYQQADTGTKMIHIGKNTKSTIV
EEEEEEECCCEEEEECCCEEEECCCCCCCEEEEEEECCCHHCCCCCEEEEECCCCHHHHH
SKGISAGHGQNTYRGAVKILSGADGARNYSQCDSLLIGEDCGAHTFPYIDVQNPTARMEH
HCCCCCCCCCCHHHHHHHEEECCCCCCCHHHHCCEEEECCCCCCCCCEEECCCCHHHHHH
EASTSKIGEDQIFYCNQRGIATEDAVSMIVNGFCKEVFRELPMEFAVEAQKLLEVSLEGS
CCHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
VG
CC
>Mature Secondary Structure 
TTSTQTIEQLAGKEYQYGFVTDIEQETVPPGLSEEVIRLISAKKQEPEFMLEWRLKAYR
CCCHHHHHHHCCCCCCCCCEECCCHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
HWLSMTTPEWANVHYPPIDYQNIVYYAALKPKTDGPKSLDEVDPELLRTYEKLGIPLQER
HHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCHHHH
AALAGVAVDAVFDSVSVATTFKDKLGAMGIIFCSFSEAVREHPELVRKYLGSVVPTGDNF
HHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCH
YAALNSAVFTDGSFVYVPKGVRCPMELSTYFRINAKNTGQFERTLIIADAGSYVSYLEGC
HHHHCCCEEECCCEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHCC
TAPMRDENQLHAAVVELIAHDDATIKYSTVQNWYPGDKEGKGGIYNFVTKRGRCEGRNSK
CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
ISWTQVETGSAITWKYPSCILKGDNSVGEFYSVALTNNYQQADTGTKMIHIGKNTKSTIV
EEEEEEECCCEEEEECCCEEEECCCCCCCEEEEEEECCCHHCCCCCEEEEECCCCHHHHH
SKGISAGHGQNTYRGAVKILSGADGARNYSQCDSLLIGEDCGAHTFPYIDVQNPTARMEH
HCCCCCCCCCCHHHHHHHEEECCCCCCCHHHHCCEEEECCCCCCCCCEEECCCCHHHHHH
EASTSKIGEDQIFYCNQRGIATEDAVSMIVNGFCKEVFRELPMEFAVEAQKLLEVSLEGS
CCHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
VG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]