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The map label for this gene is rbcR [H]

Identifier: 37520909

GI number: 37520909

Start: 1432182

End: 1433117

Strand: Direct

Name: rbcR [H]

Synonym: glr1340

Alternate gene names: 37520909

Gene position: 1432182-1433117 (Clockwise)

Preceding gene: 37520908

Following gene: 37520911

Centisome position: 30.74

GC content: 63.25

Gene sequence:

>936_bases
ATGAACAACTTCAGCCTGGACCAAATACGCATCTTCCGGGCAATAGCCCAGCACGGCAGCTTCAAAAGGGCGGCAGAATC
GCTCTATATCTCCCAACCGGCGGTCTCGCTACAGGTCCAGAACCTCGAAGCCGCCCTCGGGATGCCGCTGTTCGACCGCT
CCGGCCGCAAGGCGGAACTCACCGAGGCAGGGCGGATTTTTCTCGACTATGCCCACCGCATCCTGGCGCTGTGCGACGAA
TCGCGGCGGGCGATTACCGATTTGCAAAACCTCAAAGGCGGCACGCTGGTGATTGGGGCCTCGCAGACCACCGGCACCTA
CTTGATCCCGCGGCTTATCGGCGAATTCCACCGCCGCTATCCGGAAGTGGGCGTGCAGCTCCATGTGATGTCCACCCGGC
GCACCGCCTACGGGGTTGCCGAGGGACGTCTCGATCTGGGGATCATCGGCGGCGAGGTGCCCTTGGAGTTGCAGGGCAGG
CTCGCTGTCGAAGTGTACGCCGAGGACGAACTGGCCCTGGTGGTGCCGGGTTTTCACCCGCTCGCGGGTGCGGAGGTGAT
CTGTCGCGATGATCTCTACGGGCTCAAGTTCATCGCCCTCGATCCCGAATCGACGACCCGCAGGGTACTCGACGGCGTGC
TGCGCCGCTTCGACATCGACGTCGAAAGCCTCAGCATTGAGATGGAACTGAGCAGCATCGAGGCCATCAAAGCGGCGGTC
CAGGCGGGGTTGGGCGTGGCGTTCCTCTCGGCGACAGCGATCGAAAAAGAGCTGCAACTGGGAGTGTTGCATCGGCTGAC
CGTCGAAGGGCTGGTGTTGCGCCGCCCCCTGACACTGCTCACCCACCCGCAGCGCTACGAATCGCGCGCCAGCCGCGTCT
TTCGCGAGCAGATCCTCACCAATTTTGCCCGTAGCGAGGCGCTTGCCCCGTCGTAA

Upstream 100 bases:

>100_bases
GGGGGCGGTTTCGCTGCACAATGAATGATGGCCTGGACAGCGGTTCATCCCTCGCGCTCATCCCCGCCGCCTGCCGTTCG
ACGTCCGATTTTTTTGTTTG

Downstream 100 bases:

>100_bases
ATTGCAAAAAAGAGGCGCGGTGCCCACAGCACCGCGCCTCTTTTAGATTCGGATTTGGAAAAGACTAACCCTTATTTGTG
GCAGGCCTCGCTCGCCAGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNNFSLDQIRIFRAIAQHGSFKRAAESLYISQPAVSLQVQNLEAALGMPLFDRSGRKAELTEAGRIFLDYAHRILALCDE
SRRAITDLQNLKGGTLVIGASQTTGTYLIPRLIGEFHRRYPEVGVQLHVMSTRRTAYGVAEGRLDLGIIGGEVPLELQGR
LAVEVYAEDELALVVPGFHPLAGAEVICRDDLYGLKFIALDPESTTRRVLDGVLRRFDIDVESLSIEMELSSIEAIKAAV
QAGLGVAFLSATAIEKELQLGVLHRLTVEGLVLRRPLTLLTHPQRYESRASRVFREQILTNFARSEALAPS

Sequences:

>Translated_311_residues
MNNFSLDQIRIFRAIAQHGSFKRAAESLYISQPAVSLQVQNLEAALGMPLFDRSGRKAELTEAGRIFLDYAHRILALCDE
SRRAITDLQNLKGGTLVIGASQTTGTYLIPRLIGEFHRRYPEVGVQLHVMSTRRTAYGVAEGRLDLGIIGGEVPLELQGR
LAVEVYAEDELALVVPGFHPLAGAEVICRDDLYGLKFIALDPESTTRRVLDGVLRRFDIDVESLSIEMELSSIEAIKAAV
QAGLGVAFLSATAIEKELQLGVLHRLTVEGLVLRRPLTLLTHPQRYESRASRVFREQILTNFARSEALAPS
>Mature_311_residues
MNNFSLDQIRIFRAIAQHGSFKRAAESLYISQPAVSLQVQNLEAALGMPLFDRSGRKAELTEAGRIFLDYAHRILALCDE
SRRAITDLQNLKGGTLVIGASQTTGTYLIPRLIGEFHRRYPEVGVQLHVMSTRRTAYGVAEGRLDLGIIGGEVPLELQGR
LAVEVYAEDELALVVPGFHPLAGAEVICRDDLYGLKFIALDPESTTRRVLDGVLRRFDIDVESLSIEMELSSIEAIKAAV
QAGLGVAFLSATAIEKELQLGVLHRLTVEGLVLRRPLTLLTHPQRYESRASRVFREQILTNFARSEALAPS

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=297, Percent_Identity=32.996632996633, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=32.5342465753425, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1788748, Length=300, Percent_Identity=31, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787879, Length=301, Percent_Identity=30.5647840531561, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87081904, Length=281, Percent_Identity=30.6049822064057, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=30.2040816326531, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787806, Length=252, Percent_Identity=28.968253968254, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788887, Length=200, Percent_Identity=33, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=260, Percent_Identity=26.5384615384615, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI145693105, Length=255, Percent_Identity=27.0588235294118, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789204, Length=277, Percent_Identity=27.7978339350181, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788626, Length=244, Percent_Identity=30.7377049180328, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=303, Percent_Identity=27.7227722772277, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790208, Length=254, Percent_Identity=27.5590551181102, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=247, Percent_Identity=28.3400809716599, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787601, Length=186, Percent_Identity=31.1827956989247, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788296, Length=251, Percent_Identity=27.0916334661355, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=28.2312925170068, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=157, Percent_Identity=33.1210191082803, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787949, Length=179, Percent_Identity=28.4916201117318, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082024, Length=314, Percent_Identity=25.4777070063694, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=32.7868852459016, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787589, Length=167, Percent_Identity=29.3413173652695, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=24.6963562753036, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34346; Mature: 34346

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNFSLDQIRIFRAIAQHGSFKRAAESLYISQPAVSLQVQNLEAALGMPLFDRSGRKAEL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHEECCCCEEEEEECHHHHHCCCCCCCCCCEEEH
TEAGRIFLDYAHRILALCDESRRAITDLQNLKGGTLVIGASQTTGTYLIPRLIGEFHRRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
PEVGVQLHVMSTRRTAYGVAEGRLDLGIIGGEVPLELQGRLAVEVYAEDELALVVPGFHP
CCCCEEEEEEECCCHHHEEECCCEEEEEECCCCCEEECCEEEEEEEECCCEEEEECCCCC
LAGAEVICRDDLYGLKFIALDPESTTRRVLDGVLRRFDIDVESLSIEMELSSIEAIKAAV
CCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHEEEEEEHHHHHHHHHHH
QAGLGVAFLSATAIEKELQLGVLHRLTVEGLVLRRPLTLLTHPQRYESRASRVFREQILT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHH
NFARSEALAPS
HHHHHCCCCCC
>Mature Secondary Structure
MNNFSLDQIRIFRAIAQHGSFKRAAESLYISQPAVSLQVQNLEAALGMPLFDRSGRKAEL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHEECCCCEEEEEECHHHHHCCCCCCCCCCEEEH
TEAGRIFLDYAHRILALCDESRRAITDLQNLKGGTLVIGASQTTGTYLIPRLIGEFHRRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
PEVGVQLHVMSTRRTAYGVAEGRLDLGIIGGEVPLELQGRLAVEVYAEDELALVVPGFHP
CCCCEEEEEEECCCHHHEEECCCEEEEEECCCCCEEECCEEEEEEEECCCEEEEECCCCC
LAGAEVICRDDLYGLKFIALDPESTTRRVLDGVLRRFDIDVESLSIEMELSSIEAIKAAV
CCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHEEEEEEHHHHHHHHHHH
QAGLGVAFLSATAIEKELQLGVLHRLTVEGLVLRRPLTLLTHPQRYESRASRVFREQILT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHH
NFARSEALAPS
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]