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The map label for this gene is apcA [H]

Identifier: 37520823

GI number: 37520823

Start: 1331652

End: 1332236

Strand: Reverse

Name: apcA [H]

Synonym: gll1254

Alternate gene names: 37520823

Gene position: 1332236-1331652 (Counterclockwise)

Preceding gene: 37520824

Following gene: 37520821

Centisome position: 28.59

GC content: 61.37

Gene sequence:

>585_bases
ATGCAATCGCCATTGAGTGATCAGGTTAAAGTCCTTATCGCCAAAGCCAAAATCATGGGTTTTGACGATTGGCAGGGTGC
CTATCCCGCCGAGGCCCTCGCCCTGCTGCGCACCGCCGACGCCGAGAGCCGCTATCTCACCGACTCCGATCTGGACCGTC
TGGCTGTACTGCTTCCGGAGGCGGCACCTGCGCTGGAGACGGTGCGTTTTTTGCGCGACCGTGCCAGGCCCATCGTCTCT
GCGGCCCGCTCGCAGGTGCTGGAGGAATTCCCCGGCATCACCGAACCTGGGGGCGATCTTTATCCTTCGGTGCGCGCCGA
AGCCTGCTGGCGCGACTACTGGCATTTTCTGCGTTCGATTACCTACGGCATTGCCGCCCGCCGTCCGAATTTCACCAGCC
CCGAAGGCGTGCACTACCTGCACCTGTTGTATCAGGAGTTGCGAGTGCCGCTTGGAGCGATGCTTCTGGGCATTCACTGC
CTTAGAGGGGCGAGTTTGCAGCATTTTTCGGTCGCCGAGCAGCAGGCGCTTGGCCCCTATTTTGATCATCTGGCGGAGCG
CGTGGGGGATCCCTCACAGCGGTGA

Upstream 100 bases:

>100_bases
CTGGCCCGCGAGTCGGGCGAATTGCAGCGGGTGGTGGCCATGGCGCTTGCACAGCTACAAAAGCGGGCGATGGCTTGAAC
AACCTCTGGAGAGCGAGACC

Downstream 100 bases:

>100_bases
GTTAGACACAATCCAAGCTCGTAGAGGCGACCGGGTTACCGAGCCCAAGAAACGAAAAGCCTACGCTATGGCGCAAGCGG
TTGGCGCTGGGAGCTTCTCA

Product: allophycocyanin subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MQSPLSDQVKVLIAKAKIMGFDDWQGAYPAEALALLRTADAESRYLTDSDLDRLAVLLPEAAPALETVRFLRDRARPIVS
AARSQVLEEFPGITEPGGDLYPSVRAEACWRDYWHFLRSITYGIAARRPNFTSPEGVHYLHLLYQELRVPLGAMLLGIHC
LRGASLQHFSVAEQQALGPYFDHLAERVGDPSQR

Sequences:

>Translated_194_residues
MQSPLSDQVKVLIAKAKIMGFDDWQGAYPAEALALLRTADAESRYLTDSDLDRLAVLLPEAAPALETVRFLRDRARPIVS
AARSQVLEEFPGITEPGGDLYPSVRAEACWRDYWHFLRSITYGIAARRPNFTSPEGVHYLHLLYQELRVPLGAMLLGIHC
LRGASLQHFSVAEQQALGPYFDHLAERVGDPSQR
>Mature_194_residues
MQSPLSDQVKVLIAKAKIMGFDDWQGAYPAEALALLRTADAESRYLTDSDLDRLAVLLPEAAPALETVRFLRDRARPIVS
AARSQVLEEFPGITEPGGDLYPSVRAEACWRDYWHFLRSITYGIAARRPNFTSPEGVHYLHLLYQELRVPLGAMLLGIHC
LRGASLQHFSVAEQQALGPYFDHLAERVGDPSQR

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 21702; Mature: 21702

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSPLSDQVKVLIAKAKIMGFDDWQGAYPAEALALLRTADAESRYLTDSDLDRLAVLLPE
CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
AAPALETVRFLRDRARPIVSAARSQVLEEFPGITEPGGDLYPSVRAEACWRDYWHFLRSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TYGIAARRPNFTSPEGVHYLHLLYQELRVPLGAMLLGIHCLRGASLQHFSVAEQQALGPY
HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHH
FDHLAERVGDPSQR
HHHHHHHHCCCCCC
>Mature Secondary Structure
MQSPLSDQVKVLIAKAKIMGFDDWQGAYPAEALALLRTADAESRYLTDSDLDRLAVLLPE
CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
AAPALETVRFLRDRARPIVSAARSQVLEEFPGITEPGGDLYPSVRAEACWRDYWHFLRSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TYGIAARRPNFTSPEGVHYLHLLYQELRVPLGAMLLGIHCLRGASLQHFSVAEQQALGPY
HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHH
FDHLAERVGDPSQR
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6792029; 9990029 [H]