Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 37520812

GI number: 37520812

Start: 1321346

End: 1321930

Strand: Reverse

Name: ybeY [C]

Synonym: gll1243

Alternate gene names: 37520812

Gene position: 1321930-1321346 (Counterclockwise)

Preceding gene: 37520819

Following gene: 37520811

Centisome position: 28.37

GC content: 58.8

Gene sequence:

>585_bases
ATGGCAAGAGCCTATCGCCTTGGGGAAGATTTGGGAACTGGGGCCAAGTGTGTTAAATTTCTTATCAATCTTGCGAGTAC
CCCAAGCATGGCGGTTGTGCCGACGGCTGTCGAGTTGTGCATCCAGGCTGCGGTCGATGACCCGGTTGGGGAAGCGCGCT
GGCAATCTTGGTTCGACCAGTGGCTTCTGGAGTTGCAATCGGCGGGGGCGGTGGAGTTGACCTTGCGCCTGACCGACGAC
GCTGAGATCCGCAGGCTCAACGCCCGCTTTCGCGGCGTCGATGCCCCCACGGACGTCCTCTCCTTTGAATTTGAAGCGGA
CGACACACAAGCGCTGATTGCGGAGGAGCCCCTGTATCTTGGGGATATCGTCGTCTCTGTGCCGACGGCGACAAGGCAGG
CGCGCGAATTCGGGCACACTTTAGAAGTGGAACTGGCCTGGTTGGCTGTCCATGGTCTGTTGCATCTGTTGGGATGGGAC
CACCCGGACGAGCAAAGCTGGCGGGCCATGGTGACACAGCAAGCGCGATTGCTTAAAGGAGTGAACGTTGTCTATGACTG
GCCAAGCGTCTACCCAGTCGGCTAA

Upstream 100 bases:

>100_bases
GCGCCAGAAGCACCAGACGCCGATCAGCAGGCTTGCCGTCAGGTGCAGGCTCAAGGCGACTACAAAGCTGCCGCAAAACC
ACCAGTAGACCAAGGTACCC

Downstream 100 bases:

>100_bases
AAGAACGATCCGGCGCCGGCAATCCTGGCAGGTGGCCGAAACGCTCTCCAAAAGCTTCACCTACGCCGGGAGCGGCATTC
TCTACGCCACGGCCACGCAG

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MARAYRLGEDLGTGAKCVKFLINLASTPSMAVVPTAVELCIQAAVDDPVGEARWQSWFDQWLLELQSAGAVELTLRLTDD
AEIRRLNARFRGVDAPTDVLSFEFEADDTQALIAEEPLYLGDIVVSVPTATRQAREFGHTLEVELAWLAVHGLLHLLGWD
HPDEQSWRAMVTQQARLLKGVNVVYDWPSVYPVG

Sequences:

>Translated_194_residues
MARAYRLGEDLGTGAKCVKFLINLASTPSMAVVPTAVELCIQAAVDDPVGEARWQSWFDQWLLELQSAGAVELTLRLTDD
AEIRRLNARFRGVDAPTDVLSFEFEADDTQALIAEEPLYLGDIVVSVPTATRQAREFGHTLEVELAWLAVHGLLHLLGWD
HPDEQSWRAMVTQQARLLKGVNVVYDWPSVYPVG
>Mature_193_residues
ARAYRLGEDLGTGAKCVKFLINLASTPSMAVVPTAVELCIQAAVDDPVGEARWQSWFDQWLLELQSAGAVELTLRLTDDA
EIRRLNARFRGVDAPTDVLSFEFEADDTQALIAEEPLYLGDIVVSVPTATRQAREFGHTLEVELAWLAVHGLLHLLGWDH
PDEQSWRAMVTQQARLLKGVNVVYDWPSVYPVG

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=130, Percent_Identity=37.6923076923077, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_GLOVI (Q7NL83)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924189.1
- ProteinModelPortal:   Q7NL83
- SMR:   Q7NL83
- GeneID:   2598911
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:gll1243
- NMPDR:   fig|251221.1.peg.1243
- HOGENOM:   HBG734136
- OMA:   VELAWLA
- ProtClustDB:   PRK00016
- BioCyc:   GVIO251221:GLL1243-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 21559; Mature: 21427

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAYRLGEDLGTGAKCVKFLINLASTPSMAVVPTAVELCIQAAVDDPVGEARWQSWFDQ
CCCCHHCCHHCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHH
WLLELQSAGAVELTLRLTDDAEIRRLNARFRGVDAPTDVLSFEFEADDTQALIAEEPLYL
HHHHHHCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCHHEEEEECCCCCHHHHHCCCEEE
GDIVVSVPTATRQAREFGHTLEVELAWLAVHGLLHLLGWDHPDEQSWRAMVTQQARLLKG
CCEEEECCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
VNVVYDWPSVYPVG
CEEEEECCCCCCCC
>Mature Secondary Structure 
ARAYRLGEDLGTGAKCVKFLINLASTPSMAVVPTAVELCIQAAVDDPVGEARWQSWFDQ
CCCHHCCHHCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHH
WLLELQSAGAVELTLRLTDDAEIRRLNARFRGVDAPTDVLSFEFEADDTQALIAEEPLYL
HHHHHHCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCHHEEEEECCCCCHHHHHCCCEEE
GDIVVSVPTATRQAREFGHTLEVELAWLAVHGLLHLLGWDHPDEQSWRAMVTQQARLLKG
CCEEEECCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
VNVVYDWPSVYPVG
CEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292