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The map label for this gene is ydcM [C]

Identifier: 37520788

GI number: 37520788

Start: 1296947

End: 1297384

Strand: Direct

Name: ydcM [C]

Synonym: glr1219

Alternate gene names: 37520788

Gene position: 1296947-1297384 (Clockwise)

Preceding gene: 37520787

Following gene: 37520789

Centisome position: 27.84

GC content: 55.48

Gene sequence:

>438_bases
ATGCATTTGCGAGTCGCCAACCGGCGCAAGGATTTCCACCACAAAACCGCTGTCAAGCTTCTCGCAAAGTCCAAGGTCAT
AGCCCATGAAGACTTGAACATTCAAGGGTTGGCGAGCACCCGTCTTGCCAAGTCAGTATCCGACGCTGGTTGGGGTCAAT
TCATTACAATCCTGACAAACAAGGCTGCAAGAGCCGGGTGTCTGGTGATTGCAGTGAACCCAAACGGTACTACACAAATG
TGTTCCGGCTGCGATACGCAAGTACCCAAGACTCTTGGCGAGAGGTGGCACAGTTGCCCCCGATGTGGTCTGGAGTTGAA
CAGGGACCAGAACGCAGCGCGGAACATTAAGAGCAGGGCGGTGGGGCATCCCGTCCCTGCTCGGGGAGGCTACCGCAGTA
CCGTTCCTACGAACCGAGAAGCCTGCGCTCTATGCTAA

Upstream 100 bases:

>100_bases
CAAAGCGCAGCAGCGGCCGGCGAGGGCGTAAAGGCAGCTATCGCGCAAGCGTAACAAAGCCGGCAAACGCAGAGCAAAGG
CAGTTCGCAAGGTAGGACGT

Downstream 100 bases:

>100_bases
GCATGAGCGGCGGAAGTATGTCACGATTATCGATGTTTTCCATGCTTTTGAAGCGCCGCACCGTACTTGCCGCCGCCGGT
TGCTGGCTTGCCGCCCGTCA

Product: putative transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MHLRVANRRKDFHHKTAVKLLAKSKVIAHEDLNIQGLASTRLAKSVSDAGWGQFITILTNKAARAGCLVIAVNPNGTTQM
CSGCDTQVPKTLGERWHSCPRCGLELNRDQNAARNIKSRAVGHPVPARGGYRSTVPTNREACALC

Sequences:

>Translated_145_residues
MHLRVANRRKDFHHKTAVKLLAKSKVIAHEDLNIQGLASTRLAKSVSDAGWGQFITILTNKAARAGCLVIAVNPNGTTQM
CSGCDTQVPKTLGERWHSCPRCGLELNRDQNAARNIKSRAVGHPVPARGGYRSTVPTNREACALC
>Mature_145_residues
MHLRVANRRKDFHHKTAVKLLAKSKVIAHEDLNIQGLASTRLAKSVSDAGWGQFITILTNKAARAGCLVIAVNPNGTTQM
CSGCDTQVPKTLGERWHSCPRCGLELNRDQNAARNIKSRAVGHPVPARGGYRSTVPTNREACALC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 15753; Mature: 15753

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLRVANRRKDFHHKTAVKLLAKSKVIAHEDLNIQGLASTRLAKSVSDAGWGQFITILTN
CCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEC
KAARAGCLVIAVNPNGTTQMCSGCDTQVPKTLGERWHSCPRCGLELNRDQNAARNIKSRA
CCCCCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHH
VGHPVPARGGYRSTVPTNREACALC
CCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHLRVANRRKDFHHKTAVKLLAKSKVIAHEDLNIQGLASTRLAKSVSDAGWGQFITILTN
CCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEC
KAARAGCLVIAVNPNGTTQMCSGCDTQVPKTLGERWHSCPRCGLELNRDQNAARNIKSRA
CCCCCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHH
VGHPVPARGGYRSTVPTNREACALC
CCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]