Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 37520765

GI number: 37520765

Start: 1272983

End: 1273993

Strand: Reverse

Name: cydB [H]

Synonym: gvip164

Alternate gene names: 37520765

Gene position: 1273993-1272983 (Counterclockwise)

Preceding gene: 37520766

Following gene: 37520764

Centisome position: 27.34

GC content: 56.97

Gene sequence:

>1011_bases
ATGGATCCGCTCGCACAGTTCCTACCGCAGGTCTGGTTTTTTATCCTGGCGCTGTTTTTGTTTCTCTACGTCATGCTCGA
CGGCTTCGATCTGGGAGTCGGCATTCTTTCGCTCACTTCCTCCAATGAGGAGCGCCGGGGCATCCTGATGACCAGTCTCA
GCAATGTTTGGGATGCCAACGAAACCTGGCTGGTGATTATGGGGGGTGCTCTGTTCGGAGCTTTTCCCCTCGCCTACGGC
ACGATCCTCAACGGTCTGTACATCCCGATTTTTTTGATGATCTTCGGATTGATTTTCCGGGCGGTCGCCTTCGAATTTCG
CGAGCACGCCAAGCGCAAGCTCTTCTGGAACTACGCCTTCGGCCTCGGCAGTTTTCTGGCGGCCCTTGGCCAGGGTTTTG
CTCTGGGCAGCGTGCTCCAAGGGATCACCGTCGATGCGGCGGGCCGCTTCGCAGGCTCCACCTGGGATTGGCTGAGTTGG
CAATCGGTACTGGTGGCGCTCACCCTTATCCAAGGCTACGTGCTCATCGGTTCGACCTATCTCATCACCAAGACCGAGGG
TGAACTGCAGGACACCCACTACCGCACCGCCAAAATCGCAGCGCTCACCACGCTCGTGGGCGCCGTCTTCATCACCATCT
CGACTCCCATCTTCTACGAGAGCGCCCGCACCCGTCTGTTCCAGGAACCGTTTATTTACATCTTTGCGGCCATCCCCTTG
CTGGGTGCCCTGCTTATTTGGCTGCTGCTGCGCAGTCTTTCCCGCCGTCAGGAGCGTGCCCCCTTTATCTGGACGATCTT
GATTTTCACCCTCACCTTTGCCGGGCTGGGGCTGATCGTTTTTCCGTACATCATTCCGATGTCGGTGACCATCTACCAGG
CCGCCGCCGCCCCCAGTGCCCTGGTGTTCATGATCATCTTTATGGGCTTTTTGATCCCGATCATGCTCGCTTACAACATC
TTCCAGTACATCGTCTTTCGCGGCAAAGTCACCGGCGGTCATTACGAGTGA

Upstream 100 bases:

>100_bases
GAGGGCCGGTTACCCGTCGAAGTGGAGCCTGCCGAGCACCTCCCCGACAGCCGCCCGGCCGAAGCCCAGCAAGAAGCCCA
ACCGTAAGCGAGGAAAATGC

Downstream 100 bases:

>100_bases
AGCTTCTTGCGGATCGGAATGTTTCGTCGACTTGAGACAGTATAGCAAGGTTCAATCAAGCAAACACGGCTTGCGAATTG
TCGCAACTGTTTGCGATTAC

Product: cytochrome D ubiquinol oxidase chain II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MDPLAQFLPQVWFFILALFLFLYVMLDGFDLGVGILSLTSSNEERRGILMTSLSNVWDANETWLVIMGGALFGAFPLAYG
TILNGLYIPIFLMIFGLIFRAVAFEFREHAKRKLFWNYAFGLGSFLAALGQGFALGSVLQGITVDAAGRFAGSTWDWLSW
QSVLVALTLIQGYVLIGSTYLITKTEGELQDTHYRTAKIAALTTLVGAVFITISTPIFYESARTRLFQEPFIYIFAAIPL
LGALLIWLLLRSLSRRQERAPFIWTILIFTLTFAGLGLIVFPYIIPMSVTIYQAAAAPSALVFMIIFMGFLIPIMLAYNI
FQYIVFRGKVTGGHYE

Sequences:

>Translated_336_residues
MDPLAQFLPQVWFFILALFLFLYVMLDGFDLGVGILSLTSSNEERRGILMTSLSNVWDANETWLVIMGGALFGAFPLAYG
TILNGLYIPIFLMIFGLIFRAVAFEFREHAKRKLFWNYAFGLGSFLAALGQGFALGSVLQGITVDAAGRFAGSTWDWLSW
QSVLVALTLIQGYVLIGSTYLITKTEGELQDTHYRTAKIAALTTLVGAVFITISTPIFYESARTRLFQEPFIYIFAAIPL
LGALLIWLLLRSLSRRQERAPFIWTILIFTLTFAGLGLIVFPYIIPMSVTIYQAAAAPSALVFMIIFMGFLIPIMLAYNI
FQYIVFRGKVTGGHYE
>Mature_336_residues
MDPLAQFLPQVWFFILALFLFLYVMLDGFDLGVGILSLTSSNEERRGILMTSLSNVWDANETWLVIMGGALFGAFPLAYG
TILNGLYIPIFLMIFGLIFRAVAFEFREHAKRKLFWNYAFGLGSFLAALGQGFALGSVLQGITVDAAGRFAGSTWDWLSW
QSVLVALTLIQGYVLIGSTYLITKTEGELQDTHYRTAKIAALTTLVGAVFITISTPIFYESARTRLFQEPFIYIFAAIPL
LGALLIWLLLRSLSRRQERAPFIWTILIFTLTFAGLGLIVFPYIIPMSVTIYQAAAAPSALVFMIIFMGFLIPIMLAYNI
FQYIVFRGKVTGGHYE

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=370, Percent_Identity=29.4594594594595, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1787213, Length=361, Percent_Identity=26.3157894736842, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37588; Mature: 37588

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLAQFLPQVWFFILALFLFLYVMLDGFDLGVGILSLTSSNEERRGILMTSLSNVWDAN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEECCCCCHHCCHHHHHHHHHCCCC
ETWLVIMGGALFGAFPLAYGTILNGLYIPIFLMIFGLIFRAVAFEFREHAKRKLFWNYAF
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGSFLAALGQGFALGSVLQGITVDAAGRFAGSTWDWLSWQSVLVALTLIQGYVLIGSTY
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
LITKTEGELQDTHYRTAKIAALTTLVGAVFITISTPIFYESARTRLFQEPFIYIFAAIPL
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGALLIWLLLRSLSRRQERAPFIWTILIFTLTFAGLGLIVFPYIIPMSVTIYQAAAAPSA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVFMIIFMGFLIPIMLAYNIFQYIVFRGKVTGGHYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDPLAQFLPQVWFFILALFLFLYVMLDGFDLGVGILSLTSSNEERRGILMTSLSNVWDAN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEECCCCCHHCCHHHHHHHHHCCCC
ETWLVIMGGALFGAFPLAYGTILNGLYIPIFLMIFGLIFRAVAFEFREHAKRKLFWNYAF
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGSFLAALGQGFALGSVLQGITVDAAGRFAGSTWDWLSWQSVLVALTLIQGYVLIGSTY
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
LITKTEGELQDTHYRTAKIAALTTLVGAVFITISTPIFYESARTRLFQEPFIYIFAAIPL
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LGALLIWLLLRSLSRRQERAPFIWTILIFTLTFAGLGLIVFPYIIPMSVTIYQAAAAPSA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVFMIIFMGFLIPIMLAYNIFQYIVFRGKVTGGHYE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]