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The map label for this gene is cydA [H]

Identifier: 37520766

GI number: 37520766

Start: 1274007

End: 1275461

Strand: Reverse

Name: cydA [H]

Synonym: gvip165

Alternate gene names: 37520766

Gene position: 1275461-1274007 (Counterclockwise)

Preceding gene: 37520768

Following gene: 37520765

Centisome position: 27.38

GC content: 59.31

Gene sequence:

>1455_bases
ATGGATTTTCTATCCGATACCGTCATCCTATCGCGCATGCAGTTCGCGCTGACTGCCATCTTTCATATGCTCTGGCCGGT
GCTGACCACGGGCATGGGTATCTTTCTGGTCATCGTCGAAGGCCTATGGCTGAGGACGCGCAACCCCGCCTACTATCACC
ACGCCCGCTTCTGGTCGAAGCTGTACGTGTTGAACTTCGGCATCGGTGTGGCCACCGGCATTCCGATGGAATTTCAGTTC
GGCACCAACTGGGCGGCTTTTTCGGAGGCGGTGGGCGACTTTTTCGGCAGCATCCTCGGTTTTGAAGCGTCGATGGCCTT
CATGCTCGAAGCCGGTTTTTTGGGGATCATGCTGTTTGGCTGGCAGCGGGTGCATCCTTATATCCACTACTTCGCAACGA
TCATGGTCGCCTTTGGGGCGAACCTTTCGACGGTCTGGATTTTGATTGCCAACTCCTGGATGCAAACCCCGGCGGGCGGC
GAATTTGTCAACGGCAAATTCGTCGTTCAAGATTATTTTCAAGCTATGCTCAACCCCTTTAGCGGCCACAGCATCCTGCA
CATGTTCTTTGCCACCCTGGAGACTTCGCTGTTTGTGATCGGCGGCATCAGTGCCTGGTATATCCTCAAAGGCCGCAATC
AGGAGTTCTTCTCGAAATCGCTCAAGATCGCCCTGGCGGCGGCGGTTGTGGTGGCACCCGTGCAGATCTGGGTGGGCCAC
GTCAGCGGCGAGCAGGTGCGCCGCTACCAGCCCACCAAACTGGCCGCCATGGAGTCGCAGTGGGATACGATCCCGGCCGG
TCAGGCCGCCCCCTGGTCGATCGTTGCCTGGCCCGACGAGCAGGGCGAAAAAAACGACTGGGAGATCGCCGTCCCGGGCG
GCCTGGGCTATATTCTCGAATTCAAGCCGGAACTGTCCGAACCGGTCTACGGCCTCAAAGCCTACAAGCCCGAAGACCGG
CCCCCGCTGGTATGGCTGATCTTTTATTCGTTTCGCATCATGGTGGGCATCGGCTTTTTCTTTGCGGCCCTGATGCTGGT
GAGCGCAGTGCAATGGCTGCGTGGCAAGCTTTCGGTCGACACTATCGGCTCCCAGCGCTGGCTGATGCGCGCCTGGATTT
TGGCAGCCCCTTTGGGCTACATCGCCGTCGAGTGCGGCTGGATCGTGCGCTGTGTGGGCCGCCAGCCGTGGATCGTCTAC
GGCCAGATCCGCACCGCCGAAGGCGTCTCCAACGTGCCGGCAAGCAACGTGCTGACGTCGCTGACGTTTTTTGCAGTAGT
CTACACGTTTCTGTTTTGCTGTGTGCTCTACTTCGGAGCGCGCATTCTCCAGCGCGGCCCCAATCTCAATCTGCCGGTTC
CGGATTTTGAGGGCCGGTTACCCGTCGAAGTGGAGCCTGCCGAGCACCTCCCCGACAGCCGCCCGGCCGAAGCCCAGCAA
GAAGCCCAACCGTAA

Upstream 100 bases:

>100_bases
CCGCCAACTGCCCCCCGCAGTCCACGAGCCGAGAATTTCGCCGGGGCCGTCGAGCGGCCGGTATGGAATTTTTCAATTCG
CTTAGTGAGCAGAAATACCC

Downstream 100 bases:

>100_bases
GCGAGGAAAATGCATGGATCCGCTCGCACAGTTCCTACCGCAGGTCTGGTTTTTTATCCTGGCGCTGTTTTTGTTTCTCT
ACGTCATGCTCGACGGCTTC

Product: cytochrome D ubiquinol oxidase chain I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MDFLSDTVILSRMQFALTAIFHMLWPVLTTGMGIFLVIVEGLWLRTRNPAYYHHARFWSKLYVLNFGIGVATGIPMEFQF
GTNWAAFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFGWQRVHPYIHYFATIMVAFGANLSTVWILIANSWMQTPAGG
EFVNGKFVVQDYFQAMLNPFSGHSILHMFFATLETSLFVIGGISAWYILKGRNQEFFSKSLKIALAAAVVVAPVQIWVGH
VSGEQVRRYQPTKLAAMESQWDTIPAGQAAPWSIVAWPDEQGEKNDWEIAVPGGLGYILEFKPELSEPVYGLKAYKPEDR
PPLVWLIFYSFRIMVGIGFFFAALMLVSAVQWLRGKLSVDTIGSQRWLMRAWILAAPLGYIAVECGWIVRCVGRQPWIVY
GQIRTAEGVSNVPASNVLTSLTFFAVVYTFLFCCVLYFGARILQRGPNLNLPVPDFEGRLPVEVEPAEHLPDSRPAEAQQ
EAQP

Sequences:

>Translated_484_residues
MDFLSDTVILSRMQFALTAIFHMLWPVLTTGMGIFLVIVEGLWLRTRNPAYYHHARFWSKLYVLNFGIGVATGIPMEFQF
GTNWAAFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFGWQRVHPYIHYFATIMVAFGANLSTVWILIANSWMQTPAGG
EFVNGKFVVQDYFQAMLNPFSGHSILHMFFATLETSLFVIGGISAWYILKGRNQEFFSKSLKIALAAAVVVAPVQIWVGH
VSGEQVRRYQPTKLAAMESQWDTIPAGQAAPWSIVAWPDEQGEKNDWEIAVPGGLGYILEFKPELSEPVYGLKAYKPEDR
PPLVWLIFYSFRIMVGIGFFFAALMLVSAVQWLRGKLSVDTIGSQRWLMRAWILAAPLGYIAVECGWIVRCVGRQPWIVY
GQIRTAEGVSNVPASNVLTSLTFFAVVYTFLFCCVLYFGARILQRGPNLNLPVPDFEGRLPVEVEPAEHLPDSRPAEAQQ
EAQP
>Mature_484_residues
MDFLSDTVILSRMQFALTAIFHMLWPVLTTGMGIFLVIVEGLWLRTRNPAYYHHARFWSKLYVLNFGIGVATGIPMEFQF
GTNWAAFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFGWQRVHPYIHYFATIMVAFGANLSTVWILIANSWMQTPAGG
EFVNGKFVVQDYFQAMLNPFSGHSILHMFFATLETSLFVIGGISAWYILKGRNQEFFSKSLKIALAAAVVVAPVQIWVGH
VSGEQVRRYQPTKLAAMESQWDTIPAGQAAPWSIVAWPDEQGEKNDWEIAVPGGLGYILEFKPELSEPVYGLKAYKPEDR
PPLVWLIFYSFRIMVGIGFFFAALMLVSAVQWLRGKLSVDTIGSQRWLMRAWILAAPLGYIAVECGWIVRCVGRQPWIVY
GQIRTAEGVSNVPASNVLTSLTFFAVVYTFLFCCVLYFGARILQRGPNLNLPVPDFEGRLPVEVEPAEHLPDSRPAEAQQ
EAQP

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=34.1269841269841, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI87081779, Length=310, Percent_Identity=41.2903225806452, Blast_Score=230, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 54282; Mature: 54282

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLSDTVILSRMQFALTAIFHMLWPVLTTGMGIFLVIVEGLWLRTRNPAYYHHARFWSK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCHHHHHHHHHH
LYVLNFGIGVATGIPMEFQFGTNWAAFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFG
HHEEEECCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQRVHPYIHYFATIMVAFGANLSTVWILIANSWMQTPAGGEFVNGKFVVQDYFQAMLNPF
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHCCCCCCCEECCEEHHHHHHHHHCCCC
SGHSILHMFFATLETSLFVIGGISAWYILKGRNQEFFSKSLKIALAAAVVVAPVQIWVGH
CCHHHHHHHHHHHHHHEEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEC
VSGEQVRRYQPTKLAAMESQWDTIPAGQAAPWSIVAWPDEQGEKNDWEIAVPGGLGYILE
CCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEE
FKPELSEPVYGLKAYKPEDRPPLVWLIFYSFRIMVGIGFFFAALMLVSAVQWLRGKLSVD
ECCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
TIGSQRWLMRAWILAAPLGYIAVECGWIVRCVGRQPWIVYGQIRTAEGVSNVPASNVLTS
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCHHHHHHH
LTFFAVVYTFLFCCVLYFGARILQRGPNLNLPVPDFEGRLPVEVEPAEHLPDSRPAEAQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCHH
EAQP
CCCC
>Mature Secondary Structure
MDFLSDTVILSRMQFALTAIFHMLWPVLTTGMGIFLVIVEGLWLRTRNPAYYHHARFWSK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCHHHHHHHHHH
LYVLNFGIGVATGIPMEFQFGTNWAAFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFG
HHEEEECCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQRVHPYIHYFATIMVAFGANLSTVWILIANSWMQTPAGGEFVNGKFVVQDYFQAMLNPF
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHCCCCCCCEECCEEHHHHHHHHHCCCC
SGHSILHMFFATLETSLFVIGGISAWYILKGRNQEFFSKSLKIALAAAVVVAPVQIWVGH
CCHHHHHHHHHHHHHHEEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEC
VSGEQVRRYQPTKLAAMESQWDTIPAGQAAPWSIVAWPDEQGEKNDWEIAVPGGLGYILE
CCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEE
FKPELSEPVYGLKAYKPEDRPPLVWLIFYSFRIMVGIGFFFAALMLVSAVQWLRGKLSVD
ECCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
TIGSQRWLMRAWILAAPLGYIAVECGWIVRCVGRQPWIVYGQIRTAEGVSNVPASNVLTS
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCHHHHHHH
LTFFAVVYTFLFCCVLYFGARILQRGPNLNLPVPDFEGRLPVEVEPAEHLPDSRPAEAQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCHH
EAQP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]