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The map label for this gene is psb28-2

Identifier: 37520610

GI number: 37520610

Start: 1115745

End: 1116200

Strand: Direct

Name: psb28-2

Synonym: gvip143

Alternate gene names: NA

Gene position: 1115745-1116200 (Clockwise)

Preceding gene: 37520608

Following gene: 37520611

Centisome position: 23.95

GC content: 57.89

Gene sequence:

>456_bases
GTGTACCAGCCCATCCGCCCGGAAAGCACCCGCCGCTTCGGCGCGGTACAGTGGTTGGAACGGCATTCGGGAGGGCAGTC
CTTGGCGACGATCGAATTTATCAGCGGCATCCGCGAGGAACTGACCGAAATCAAACTGCGCCGCGGCCAGACCAGCGGCA
ACCGCATCGTCGTGTTCGTCTTCGAGAAGGTGAATGCGATGGACAAACTTAGCAGCTTCTCCTCGGGGGGTGCCCAGTAC
ATGTTGCTCAACGACGAAGAAGGCGACATCCAGGTCACCCCGCGCAATCTCGAATTTTTTTATAAAAGCGACGACAACCT
CGCCAAGCTTGTGTGCACCTTCGAATTGATCGACGATTTGCAGTGGCAGCGGTTGCGCCGGTTTATGGACCGCTACGCCG
CCAGCAACGGCATGGAGTACCAGGACCGAGGCCCGCAGGACAAAATGAAACAGTAG

Upstream 100 bases:

>100_bases
AGGCGCGCGCTTCGCCGCGGGTCTTATACATTTTCCAGTTGCCCGCCAGAACCTTTCGTCGCAAGGCAGTGACACCCCGA
TATCCGATTTACCCTCAGCA

Downstream 100 bases:

>100_bases
TGACACCGTCTCCCCTACCGCTATGACCGTCTTCGAAGGCAACCTCCAGGACACCCGGGATCTAAAATTCGCCATTGTGA
TCGCGCGCTTCAACGACCTG

Product: photosystem II 13 kDa protein

Products: NA

Alternate protein names: Photosystem II; Photosystem II Complex Subunit; Photosystem II Protein; Photosystem II Reaction Center W Protein

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MYQPIRPESTRRFGAVQWLERHSGGQSLATIEFISGIREELTEIKLRRGQTSGNRIVVFVFEKVNAMDKLSSFSSGGAQY
MLLNDEEGDIQVTPRNLEFFYKSDDNLAKLVCTFELIDDLQWQRLRRFMDRYAASNGMEYQDRGPQDKMKQ

Sequences:

>Translated_151_residues
MYQPIRPESTRRFGAVQWLERHSGGQSLATIEFISGIREELTEIKLRRGQTSGNRIVVFVFEKVNAMDKLSSFSSGGAQY
MLLNDEEGDIQVTPRNLEFFYKSDDNLAKLVCTFELIDDLQWQRLRRFMDRYAASNGMEYQDRGPQDKMKQ
>Mature_151_residues
MYQPIRPESTRRFGAVQWLERHSGGQSLATIEFISGIREELTEIKLRRGQTSGNRIVVFVFEKVNAMDKLSSFSSGGAQY
MLLNDEEGDIQVTPRNLEFFYKSDDNLAKLVCTFELIDDLQWQRLRRFMDRYAASNGMEYQDRGPQDKMKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17585; Mature: 17585

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQPIRPESTRRFGAVQWLERHSGGQSLATIEFISGIREELTEIKLRRGQTSGNRIVVFV
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
FEKVNAMDKLSSFSSGGAQYMLLNDEEGDIQVTPRNLEFFYKSDDNLAKLVCTFELIDDL
EHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHH
QWQRLRRFMDRYAASNGMEYQDRGPQDKMKQ
HHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MYQPIRPESTRRFGAVQWLERHSGGQSLATIEFISGIREELTEIKLRRGQTSGNRIVVFV
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
FEKVNAMDKLSSFSSGGAQYMLLNDEEGDIQVTPRNLEFFYKSDDNLAKLVCTFELIDDL
EHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHH
QWQRLRRFMDRYAASNGMEYQDRGPQDKMKQ
HHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA