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The map label for this gene is pds [H]

Identifier: 37520436

GI number: 37520436

Start: 914022

End: 915704

Strand: Direct

Name: pds [H]

Synonym: gvip113

Alternate gene names: 37520436

Gene position: 914022-915704 (Clockwise)

Preceding gene: 37520430

Following gene: 37520437

Centisome position: 19.62

GC content: 62.03

Gene sequence:

>1683_bases
GTGTTACGATCTGTAATCAAGCGTCGGACACGGAAGGGAGCAGCTTTGGAGCGTAAGAAGGCCATTGTCATCGGTTCGGG
TGTCGGCGGGCTTTCGCTGGGGATCCGTCTGCAGAGCCTCGGGTTTGACACGACGATCTTCGAGAAGCTGGACGGACCGG
GCGGGCGGGCCTACGTGCGCCGCGCCGAGGGCTTCACCTTCGACATGGGGCCGACGGTGATCACCGTGCCCCACTTTATC
GAGGAACTGTTCGCCCTTGAACGGGATCAACCTGCACTCGATAAGCCGGACTTTCCGGCAGCTGTCCTGGATGAAAACCG
CCGAATCACCTCGGGGGTGAGCGGGGGACCGGCCACCTCGAAGTATGTCCAGATCATTCCGATTTTGCCCTTCTACCGCA
TTTACTTCGACGACGGGACACACTTTGACTACGACGGCGATCCCGAGCGCACCCGCGAGCAGATCCGCGCCATCGCACCG
GAAGATCTCGAAGGCTACGAGCGCTTTCACCGCGACGCGCGGGCCATCTTCGAGCGCGGTTTTCTGGAGCTGGGATTTAC
CTACTTTCGCGACGTGCCCTCGATGCTGCGCATCGCCCCGGATCTGGTGAAGCTGGATGCGGTGCGGCCGTTGTTTTCGT
TCGTGAAGCGCTACTTCAAAAGCGACAAGCTCCGGCAGGTCTTCAGCTTTGAGCCCTTGCTGGTGGGCGGCAACCCGCTC
GCGGTGCCCGCCATCTACGCGATGATCCATTTTGTCGAGAAGACCTGGGGTATCCACTTCGCCATGGGCGGCACGGGGGC
ACTCGTGCGCGGCTTCGTGCGCAAATTCGAAGAACTGGGCGGGACGATGCGCTATGGGAGCGAAGTCGCCCGCATCGAAA
TCGAAGGCAGCGGCAAGCATCGCCGGGCCACCGCCGTTGTGCCGGCGGACGGCAGCCGCCACCCGGCGGACCTCGTCGCT
TCCAACGGCGATTACGTCAACACGTACTTGAAGCTCATCGACCGCGTCCACCGGCCGAGCCACCCGGACATACGCCTGAA
GCTCGCGCGCCAATCGATGTCGCTGCTGGTCGTTTACTTCGGCTTTCGCTCGGACGGATTGAATCTAGACCTCAGACACC
ACAACATCATCCTCGGTCCGCGTTACGAAGAATTGCTCAAGGACATCTTCGGCCGGAAGATCCTAGCGGAGGACTTCTCG
CAGTACCTGCACATTCCTTCGATTACCGACCCGAGCCTGGCGCCGCCGGGGCACCACTGCGCCTATACCCTCGTACCCGT
CCCCCACAACGGCAGCGGCCTCGACTGGTCGAAACTCGCCGATCCTTTCGTAGACCGGGTGCTGCGCTTTTTGGACGAGC
GCGGGTATATTCCGGGGCTGGGCGAGCGGCTCGTCTACAAGAGCTTCATCACCCCCGACTACTTCGAGCACACGCTCAAC
AGCCGGCTGGGCAACGGCTTCGGCATCGAGCCGGTGCTGTGGCAGTCGGCGTACTTTCGCCCCCACAACAAAAGCGAAGA
CATCGCCAACTTCTACTTAGTCGGCGCCAACACCCAACCCGGCGGCGGTACCCCGGCGGTGATGATGTCCGCCAAGATGA
CGGCCCGGGAGATCGCCCGCGACTTCGATATTCCCTTTGATGTCGTGGATAGACCGCAGGTGCGCGGGACGGTCGCGAAG
TAG

Upstream 100 bases:

>100_bases
CGCACTTTCAGCTCTGCATCCACAAATCATTGCCGCTCAGGCCCTGCCAAGGATGTTCGAGACATGGGCAGCCTGGAATC
GGCACTGTGAGCCTGGGGCA

Downstream 100 bases:

>100_bases
GTCGGCTGGGTATATTACTGGAAGTGCCTATCGGCGCGAGACACGCGAAGCGGGGAGGAGCAGCATGACTTCCAAAGCGG
ATTTTTCGGCCGGGGAGTGG

Product: phytoene dehydrogenase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MLRSVIKRRTRKGAALERKKAIVIGSGVGGLSLGIRLQSLGFDTTIFEKLDGPGGRAYVRRAEGFTFDMGPTVITVPHFI
EELFALERDQPALDKPDFPAAVLDENRRITSGVSGGPATSKYVQIIPILPFYRIYFDDGTHFDYDGDPERTREQIRAIAP
EDLEGYERFHRDARAIFERGFLELGFTYFRDVPSMLRIAPDLVKLDAVRPLFSFVKRYFKSDKLRQVFSFEPLLVGGNPL
AVPAIYAMIHFVEKTWGIHFAMGGTGALVRGFVRKFEELGGTMRYGSEVARIEIEGSGKHRRATAVVPADGSRHPADLVA
SNGDYVNTYLKLIDRVHRPSHPDIRLKLARQSMSLLVVYFGFRSDGLNLDLRHHNIILGPRYEELLKDIFGRKILAEDFS
QYLHIPSITDPSLAPPGHHCAYTLVPVPHNGSGLDWSKLADPFVDRVLRFLDERGYIPGLGERLVYKSFITPDYFEHTLN
SRLGNGFGIEPVLWQSAYFRPHNKSEDIANFYLVGANTQPGGGTPAVMMSAKMTAREIARDFDIPFDVVDRPQVRGTVAK

Sequences:

>Translated_560_residues
MLRSVIKRRTRKGAALERKKAIVIGSGVGGLSLGIRLQSLGFDTTIFEKLDGPGGRAYVRRAEGFTFDMGPTVITVPHFI
EELFALERDQPALDKPDFPAAVLDENRRITSGVSGGPATSKYVQIIPILPFYRIYFDDGTHFDYDGDPERTREQIRAIAP
EDLEGYERFHRDARAIFERGFLELGFTYFRDVPSMLRIAPDLVKLDAVRPLFSFVKRYFKSDKLRQVFSFEPLLVGGNPL
AVPAIYAMIHFVEKTWGIHFAMGGTGALVRGFVRKFEELGGTMRYGSEVARIEIEGSGKHRRATAVVPADGSRHPADLVA
SNGDYVNTYLKLIDRVHRPSHPDIRLKLARQSMSLLVVYFGFRSDGLNLDLRHHNIILGPRYEELLKDIFGRKILAEDFS
QYLHIPSITDPSLAPPGHHCAYTLVPVPHNGSGLDWSKLADPFVDRVLRFLDERGYIPGLGERLVYKSFITPDYFEHTLN
SRLGNGFGIEPVLWQSAYFRPHNKSEDIANFYLVGANTQPGGGTPAVMMSAKMTAREIARDFDIPFDVVDRPQVRGTVAK
>Mature_560_residues
MLRSVIKRRTRKGAALERKKAIVIGSGVGGLSLGIRLQSLGFDTTIFEKLDGPGGRAYVRRAEGFTFDMGPTVITVPHFI
EELFALERDQPALDKPDFPAAVLDENRRITSGVSGGPATSKYVQIIPILPFYRIYFDDGTHFDYDGDPERTREQIRAIAP
EDLEGYERFHRDARAIFERGFLELGFTYFRDVPSMLRIAPDLVKLDAVRPLFSFVKRYFKSDKLRQVFSFEPLLVGGNPL
AVPAIYAMIHFVEKTWGIHFAMGGTGALVRGFVRKFEELGGTMRYGSEVARIEIEGSGKHRRATAVVPADGSRHPADLVA
SNGDYVNTYLKLIDRVHRPSHPDIRLKLARQSMSLLVVYFGFRSDGLNLDLRHHNIILGPRYEELLKDIFGRKILAEDFS
QYLHIPSITDPSLAPPGHHCAYTLVPVPHNGSGLDWSKLADPFVDRVLRFLDERGYIPGLGERLVYKSFITPDYFEHTLN
SRLGNGFGIEPVLWQSAYFRPHNKSEDIANFYLVGANTQPGGGTPAVMMSAKMTAREIARDFDIPFDVVDRPQVRGTVAK

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 62917; Mature: 62917

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSVIKRRTRKGAALERKKAIVIGSGVGGLSLGIRLQSLGFDTTIFEKLDGPGGRAYVR
CHHHHHHHHHHCCCCHHCCCEEEEECCCCCCEECEEEECCCCCHHHHHHCCCCCCCEEEE
RAEGFTFDMGPTVITVPHFIEELFALERDQPALDKPDFPAAVLDENRRITSGVSGGPATS
ECCCCEEECCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCC
KYVQIIPILPFYRIYFDDGTHFDYDGDPERTREQIRAIAPEDLEGYERFHRDARAIFERG
CEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FLELGFTYFRDVPSMLRIAPDLVKLDAVRPLFSFVKRYFKSDKLRQVFSFEPLLVGGNPL
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEECCCCH
AVPAIYAMIHFVEKTWGIHFAMGGTGALVRGFVRKFEELGGTMRYGSEVARIEIEGSGKH
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCHHHCCCEEEEEEEECCCCC
RRATAVVPADGSRHPADLVASNGDYVNTYLKLIDRVHRPSHPDIRLKLARQSMSLLVVYF
CEEEEEECCCCCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHCCEEEEEEE
GFRSDGLNLDLRHHNIILGPRYEELLKDIFGRKILAEDFSQYLHIPSITDPSLAPPGHHC
EECCCCCEEEEECCEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
AYTLVPVPHNGSGLDWSKLADPFVDRVLRFLDERGYIPGLGERLVYKSFITPDYFEHTLN
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHH
SRLGNGFGIEPVLWQSAYFRPHNKSEDIANFYLVGANTQPGGGTPAVMMSAKMTAREIAR
HHCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCHHEEEHHHHHHHHHH
DFDIPFDVVDRPQVRGTVAK
HCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRSVIKRRTRKGAALERKKAIVIGSGVGGLSLGIRLQSLGFDTTIFEKLDGPGGRAYVR
CHHHHHHHHHHCCCCHHCCCEEEEECCCCCCEECEEEECCCCCHHHHHHCCCCCCCEEEE
RAEGFTFDMGPTVITVPHFIEELFALERDQPALDKPDFPAAVLDENRRITSGVSGGPATS
ECCCCEEECCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCC
KYVQIIPILPFYRIYFDDGTHFDYDGDPERTREQIRAIAPEDLEGYERFHRDARAIFERG
CEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
FLELGFTYFRDVPSMLRIAPDLVKLDAVRPLFSFVKRYFKSDKLRQVFSFEPLLVGGNPL
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEECCCCH
AVPAIYAMIHFVEKTWGIHFAMGGTGALVRGFVRKFEELGGTMRYGSEVARIEIEGSGKH
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCHHHCCCEEEEEEEECCCCC
RRATAVVPADGSRHPADLVASNGDYVNTYLKLIDRVHRPSHPDIRLKLARQSMSLLVVYF
CEEEEEECCCCCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHCCEEEEEEE
GFRSDGLNLDLRHHNIILGPRYEELLKDIFGRKILAEDFSQYLHIPSITDPSLAPPGHHC
EECCCCCEEEEECCEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
AYTLVPVPHNGSGLDWSKLADPFVDRVLRFLDERGYIPGLGERLVYKSFITPDYFEHTLN
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHH
SRLGNGFGIEPVLWQSAYFRPHNKSEDIANFYLVGANTQPGGGTPAVMMSAKMTAREIAR
HHCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCHHEEEHHHHHHHHHH
DFDIPFDVVDRPQVRGTVAK
HCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2263648 [H]