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The map label for this gene is ycf3

Identifier: 37520284

GI number: 37520284

Start: 758077

End: 758592

Strand: Direct

Name: ycf3

Synonym: gvip074

Alternate gene names: 37520284

Gene position: 758077-758592 (Clockwise)

Preceding gene: 37520282

Following gene: 37520285

Centisome position: 16.27

GC content: 61.05

Gene sequence:

>516_bases
ATGCCCAGAAATCAGCGCAACGACAACTTTATCGACAAGAGCTTTACGGTCATGGCCGACATGATCTTGCAGATGATGCC
GGTCAAGCGTCAGGCCAAAGAGGCGTTCGCCTACTACCGCGACGGGATGGCGGCCCAGGCCGACGGCGACTATGCCGAGG
CGCTCGAATATTACAACGAAGCGCTCAAGCTCGAAGAGGACGCCTACGACCGCTCGTTTATTCACTACAACATCGGGCTC
ATCCACGCCGCCAACGGTGCCCACGACGTGGCACTGGACTACTACGACAAGGCCCTCGAAGAAAACCCGCGCCTGCCGCA
GGCCCTCAACAACATTGCGGTCATCCACCATTTTCGCGGCGCCAAGGTCGAAGAAGAGGGGCAGCCCGAGCAGGCGGAGG
AGCACTACGCCAAAGCCGCCGCCGCCTGGATCCGCGCGGTGCGCCTCGCTCCCGACAACTACATCGAAGCGCAGAACTGG
CTGAAGACCACCGGCCGCTTCGAGCTGCTCTACTAG

Upstream 100 bases:

>100_bases
CATCGATTGGGTGTTTGCCGAGCACCGGCCCGCTATCCCGGACTGCATAGCGGTCGGCGGCGGGTGCTATCTTGAAGGCA
AGCCGTTCAAGCGACCCGCG

Downstream 100 bases:

>100_bases
ACGGATCTGCGCGGTGCTCGACCCCAAACTGTTGCGCGACGATCCCGCCAAGCTCATCGAACGGCTCAACACCCGCGGCG
GCGACTTTACCGAAGTGATT

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MPRNQRNDNFIDKSFTVMADMILQMMPVKRQAKEAFAYYRDGMAAQADGDYAEALEYYNEALKLEEDAYDRSFIHYNIGL
IHAANGAHDVALDYYDKALEENPRLPQALNNIAVIHHFRGAKVEEEGQPEQAEEHYAKAAAAWIRAVRLAPDNYIEAQNW
LKTTGRFELLY

Sequences:

>Translated_171_residues
MPRNQRNDNFIDKSFTVMADMILQMMPVKRQAKEAFAYYRDGMAAQADGDYAEALEYYNEALKLEEDAYDRSFIHYNIGL
IHAANGAHDVALDYYDKALEENPRLPQALNNIAVIHHFRGAKVEEEGQPEQAEEHYAKAAAAWIRAVRLAPDNYIEAQNW
LKTTGRFELLY
>Mature_170_residues
PRNQRNDNFIDKSFTVMADMILQMMPVKRQAKEAFAYYRDGMAAQADGDYAEALEYYNEALKLEEDAYDRSFIHYNIGLI
HAANGAHDVALDYYDKALEENPRLPQALNNIAVIHHFRGAKVEEEGQPEQAEEHYAKAAAAWIRAVRLAPDNYIEAQNWL
KTTGRFELLY

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF3_GLOVI (Q7NMQ0)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_923661.1
- ProteinModelPortal:   Q7NMQ0
- SMR:   Q7NMQ0
- GeneID:   2599434
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.715
- HOGENOM:   HBG285147
- OMA:   NWLKTTG
- ProtClustDB:   PRK02603
- BioCyc:   GVIO251221:GLR0715-MONOMER
- GO:   GO:0005488
- GO:   GO:0015979
- HAMAP:   MF_00439
- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10

Pfam domain/function: PF00515 TPR_1

EC number: NA

Molecular weight: Translated: 19690; Mature: 19559

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNQRNDNFIDKSFTVMADMILQMMPVKRQAKEAFAYYRDGMAAQADGDYAEALEYYNE
CCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
ALKLEEDAYDRSFIHYNIGLIHAANGAHDVALDYYDKALEENPRLPQALNNIAVIHHFRG
HHHCCHHHCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
AKVEEEGQPEQAEEHYAKAAAAWIRAVRLAPDNYIEAQNWLKTTGRFELLY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure 
PRNQRNDNFIDKSFTVMADMILQMMPVKRQAKEAFAYYRDGMAAQADGDYAEALEYYNE
CCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
ALKLEEDAYDRSFIHYNIGLIHAANGAHDVALDYYDKALEENPRLPQALNNIAVIHHFRG
HHHCCHHHCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
AKVEEEGQPEQAEEHYAKAAAAWIRAVRLAPDNYIEAQNWLKTTGRFELLY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292