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The map label for this gene is yifB [H]

Identifier: 37520045

GI number: 37520045

Start: 508789

End: 510327

Strand: Direct

Name: yifB [H]

Synonym: glr0476

Alternate gene names: 37520045

Gene position: 508789-510327 (Clockwise)

Preceding gene: 37520044

Following gene: 37520049

Centisome position: 10.92

GC content: 66.15

Gene sequence:

>1539_bases
ATGCTCGCCTGCGTTCGAAGTGCCGCCCTTTCGGGCATCGATGCGCTGGGGGTGACTGTCGAAGTCGATGTCGGCTTCGG
CCTGCCCCAGACGACCCTGGTGGGTCTGCCCGACGCGGCGGTGCAGGAGTCGCGCGAGCGGATCAAAGCGGCGCTGCAAA
ACGCCGGTTTTGTCTTTCCGATGCGGCGGATCATCGTCAACCTTGCCCCCGGCGATCTCAAAAAAGCAGGACCGAGCTTC
GATCTGCCCATCGCCCTGGGAGTGCTCGCCGCCTCCGAACAACTGCAAGCCGAAGCGCTGGGGGATTTTTTGTTTGTGGG
CGAGTTGTCCCTCGACGGCAGCCTGCGGCCGGTCACCGGGGCGATGTGCTTGGCTCTGGGTGCCCGGCAGATGGGGCTTT
GCGGGATCGTCGTGCCGGAGGCGAACGGTCCTGAGGCGGCGCTGGTGGACGGGATCGCCGTCTACGCGCTACGCGGCTTG
CAGGAGGTGGCGCAGTTTTTGGCCGAGCCAGGCAGGTTCGAGCCGCTCGCGGGCGACTTGCTTTCACTTCTCGAACGTCC
GCCTGCTGCGGACGAGCCCGACTTGCAGGACGTCCGCGGGCAACCCCTCGCGCGGCGGGCGCTGGAAGTGGCGGCAAGCG
GCGGGCACAATTTGTTATTGCTCGGTCCTCCCGGCTCCGGCAAGACGATGCTCGCGCGCCGTCTACCGGGAATCTTGCCG
GCCCTCGGCTTCGAGGAGGCGCTCGAATCGACCCGCATCCACTCGGTAGCGGGTTTGCTCGGCCGCCGCGATTGCCTGGT
AACTGGACGCCCCTTCCGAGCGCCGCATCACTCCATCTCCGCCGCCGCTCTGGTAGGAGGTGGCGGGATACCGAAACCGG
GCGAAGTGAGCCTCGCTCATAACGGGGTACTTTTCCTGGATGAAGCCACCGAATTTGCCAGACCCGTTCTCGAATCGCTG
CGTCAGCCCCTCGAAGACGGCCAGGTGCTCATCTCCCGCACCCGCCAGTCGCTCACCTTCCCGGCCCGCTTTGCCGTTGT
GCTCGCCGCCAACCCCTGCCCCTGCGGCTACTTTGGCGATGCGCTGCGCCCCTGCCGCTGCACCGTGCGCGAGCGGGTGC
GCTACTGGGCAAAGCTATCAGGACCACTGCTCGATCGCATCGACTTACAGATCCTCGTAGGCCGCCCCAAACCCGAAGAA
ATCGCCCACCTTGTCCCCGGCGAACCCTCCGCAGCGGTGCGCAAGCGGGTCATCGCCGCGCGCGAACGCCAGAAAACACG
CTTCGCGGGTCATCCGCGGGTGCGCTGCAACGCCCACATGCAGACAAGCCACCTGCGGCTGTTCTGTACTCTCGACGAAA
GTGCGCGGCGCTTACTCGAAGGGGCGATTCGGGGATTGCACCTGTCGGCTCGATCTGCCGAGCGCGTGCTCAAAGTCGCC
CGCACCCTCGCAGACCTGGCAGGCTCGGACCAGATCGCTCCCCCACACATCGCCGAGGCGCTGCAATTTCGGTCGCTGGA
GCGGATGCAGACAGGTTGA

Upstream 100 bases:

>100_bases
CTGCCACACGTCCGGCCCCATTGACCATCTTTGGTGCAACAGTTTTCGAGGGAATGGCGGCAGGCACCCGTAAGTTTGGC
GGTATTGCAAGAAGGTCGCC

Downstream 100 bases:

>100_bases
CGGCTGCCTACCGCTGGGGCTCGGCATAGTCAATCTCTGCTCGAACCCAACACTGTAATTTGCCCTTGCAGGCGAGCGGC
TGCGGTAGGCTTAGACCGCA

Product: competence protein ComM-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MLACVRSAALSGIDALGVTVEVDVGFGLPQTTLVGLPDAAVQESRERIKAALQNAGFVFPMRRIIVNLAPGDLKKAGPSF
DLPIALGVLAASEQLQAEALGDFLFVGELSLDGSLRPVTGAMCLALGARQMGLCGIVVPEANGPEAALVDGIAVYALRGL
QEVAQFLAEPGRFEPLAGDLLSLLERPPAADEPDLQDVRGQPLARRALEVAASGGHNLLLLGPPGSGKTMLARRLPGILP
ALGFEEALESTRIHSVAGLLGRRDCLVTGRPFRAPHHSISAAALVGGGGIPKPGEVSLAHNGVLFLDEATEFARPVLESL
RQPLEDGQVLISRTRQSLTFPARFAVVLAANPCPCGYFGDALRPCRCTVRERVRYWAKLSGPLLDRIDLQILVGRPKPEE
IAHLVPGEPSAAVRKRVIAARERQKTRFAGHPRVRCNAHMQTSHLRLFCTLDESARRLLEGAIRGLHLSARSAERVLKVA
RTLADLAGSDQIAPPHIAEALQFRSLERMQTG

Sequences:

>Translated_512_residues
MLACVRSAALSGIDALGVTVEVDVGFGLPQTTLVGLPDAAVQESRERIKAALQNAGFVFPMRRIIVNLAPGDLKKAGPSF
DLPIALGVLAASEQLQAEALGDFLFVGELSLDGSLRPVTGAMCLALGARQMGLCGIVVPEANGPEAALVDGIAVYALRGL
QEVAQFLAEPGRFEPLAGDLLSLLERPPAADEPDLQDVRGQPLARRALEVAASGGHNLLLLGPPGSGKTMLARRLPGILP
ALGFEEALESTRIHSVAGLLGRRDCLVTGRPFRAPHHSISAAALVGGGGIPKPGEVSLAHNGVLFLDEATEFARPVLESL
RQPLEDGQVLISRTRQSLTFPARFAVVLAANPCPCGYFGDALRPCRCTVRERVRYWAKLSGPLLDRIDLQILVGRPKPEE
IAHLVPGEPSAAVRKRVIAARERQKTRFAGHPRVRCNAHMQTSHLRLFCTLDESARRLLEGAIRGLHLSARSAERVLKVA
RTLADLAGSDQIAPPHIAEALQFRSLERMQTG
>Mature_512_residues
MLACVRSAALSGIDALGVTVEVDVGFGLPQTTLVGLPDAAVQESRERIKAALQNAGFVFPMRRIIVNLAPGDLKKAGPSF
DLPIALGVLAASEQLQAEALGDFLFVGELSLDGSLRPVTGAMCLALGARQMGLCGIVVPEANGPEAALVDGIAVYALRGL
QEVAQFLAEPGRFEPLAGDLLSLLERPPAADEPDLQDVRGQPLARRALEVAASGGHNLLLLGPPGSGKTMLARRLPGILP
ALGFEEALESTRIHSVAGLLGRRDCLVTGRPFRAPHHSISAAALVGGGGIPKPGEVSLAHNGVLFLDEATEFARPVLESL
RQPLEDGQVLISRTRQSLTFPARFAVVLAANPCPCGYFGDALRPCRCTVRERVRYWAKLSGPLLDRIDLQILVGRPKPEE
IAHLVPGEPSAAVRKRVIAARERQKTRFAGHPRVRCNAHMQTSHLRLFCTLDESARRLLEGAIRGLHLSARSAERVLKVA
RTLADLAGSDQIAPPHIAEALQFRSLERMQTG

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=515, Percent_Identity=46.0194174757282, Blast_Score=417, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 54587; Mature: 54587

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLACVRSAALSGIDALGVTVEVDVGFGLPQTTLVGLPDAAVQESRERIKAALQNAGFVFP
CCHHHHHHHHCCCHHCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCHHH
MRRIIVNLAPGDLKKAGPSFDLPIALGVLAASEQLQAEALGDFLFVGELSLDGSLRPVTG
HHHHHEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHH
AMCLALGARQMGLCGIVVPEANGPEAALVDGIAVYALRGLQEVAQFLAEPGRFEPLAGDL
HHHHHHCCHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LSLLERPPAADEPDLQDVRGQPLARRALEVAASGGHNLLLLGPPGSGKTMLARRLPGILP
HHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCHHH
ALGFEEALESTRIHSVAGLLGRRDCLVTGRPFRAPHHSISAAALVGGGGIPKPGEVSLAH
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEC
NGVLFLDEATEFARPVLESLRQPLEDGQVLISRTRQSLTFPARFAVVLAANPCPCGYFGD
CCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
ALRPCRCTVRERVRYWAKLSGPLLDRIDLQILVGRPKPEEIAHLVPGEPSAAVRKRVIAA
CCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RERQKTRFAGHPRVRCNAHMQTSHLRLFCTLDESARRLLEGAIRGLHLSARSAERVLKVA
HHHHHHHCCCCCCEEEECCEEECEEEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RTLADLAGSDQIAPPHIAEALQFRSLERMQTG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLACVRSAALSGIDALGVTVEVDVGFGLPQTTLVGLPDAAVQESRERIKAALQNAGFVFP
CCHHHHHHHHCCCHHCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCHHH
MRRIIVNLAPGDLKKAGPSFDLPIALGVLAASEQLQAEALGDFLFVGELSLDGSLRPVTG
HHHHHEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHH
AMCLALGARQMGLCGIVVPEANGPEAALVDGIAVYALRGLQEVAQFLAEPGRFEPLAGDL
HHHHHHCCHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LSLLERPPAADEPDLQDVRGQPLARRALEVAASGGHNLLLLGPPGSGKTMLARRLPGILP
HHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCHHH
ALGFEEALESTRIHSVAGLLGRRDCLVTGRPFRAPHHSISAAALVGGGGIPKPGEVSLAH
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEC
NGVLFLDEATEFARPVLESLRQPLEDGQVLISRTRQSLTFPARFAVVLAANPCPCGYFGD
CCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
ALRPCRCTVRERVRYWAKLSGPLLDRIDLQILVGRPKPEEIAHLVPGEPSAAVRKRVIAA
CCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
RERQKTRFAGHPRVRCNAHMQTSHLRLFCTLDESARRLLEGAIRGLHLSARSAERVLKVA
HHHHHHHCCCCCCEEEECCEEECEEEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RTLADLAGSDQIAPPHIAEALQFRSLERMQTG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]