Click here to switch to the map view.

The map label for this gene is araC [H]

Identifier: 34499821

GI number: 34499821

Start: 4709430

End: 4710263

Strand: Direct

Name: araC [H]

Synonym: CV_4366

Alternate gene names: 34499821

Gene position: 4709430-4710263 (Clockwise)

Preceding gene: 34499820

Following gene: 34499822

Centisome position: 99.12

GC content: 71.58

Gene sequence:

>834_bases
ATGCCCGCTCCCGCCCAAGAACGTTCCGAACTGTTCCGCGCCGACGACCTCGGCGCGCTGGAATGCCTGGACGCGCAATA
CGCCGAGCGGACCTTCCCGCCCCATTTCCACGAAGAATTCGTCGTCAACACGCTGACCCTGGGCGCGCAGTCCTACCGCC
ACCGCGGCGGCCTGCACCGCGCCGGCGTCGGCGCGCTGGTGCTGATCAATCCCGGCGAGGTGCACACCGGCGAAACCGCC
CACGAAAACGGCTGGGCCTATCGCGGCTTCTATCCCGGCGTCGACATGATAGGCGGCCTGGCCGCCGACCTGAACGGCAA
GGCCGGCCTGCCCTATTTCCGCGACACCGTGGTGGTCGATCCCGGCCTGGCGGGCCGGCTGGACGGCCTGCACCTGCTGC
TGCGCGACAGCCACGACGCGTTGCGGCGCGAGTCGGCGCTGGCCGCAGTGTTCAGCGAGGTACTGGTCAAATACATGCGG
CTGCAGCCGGACGAGCAAGCGTCGGCTCCCACCGCGGTGGAGACCGTCAGGCAGATGCTGGCCGACGATCCCGCCGCCAA
TCACTCGCTGCAACAACTGGCGGCGGCGGTCGGCCTGTCGCCCTGGCAGCTGTGCCGCCAATTCAAGCGCGAAACCGGGC
TGCCGCCGGTAGCCTGGCGCAACCAGCTGCGGGTGGCGCGCGCCCGCAAGCTGCTGGCCGCCGGCATGCGCCCCGGCGCG
GCGGCGCTGGAGCTGGGCTTCGCCGACCAGCCGCACCTGACCCGCGCGTTCCAGCAGGCGCTGGGCGTCACGCCGGCCGC
CTATCAGAAGGCCGTGGGCGCGCGCGCCGGCTGA

Upstream 100 bases:

>100_bases
CGGCTCCGGCATCCGCACCTTCATGGCCGGCTCTTGAGCGCCGCGCGCGCGAACCCCATTTCTGCCACAATGAACGGATA
GTCCCGCTATCCGTTCCGCC

Downstream 100 bases:

>100_bases
ACCGCCCGCAAAATCGTTCAAGACAGGCCGGACGGCCTGCGCCATCATCAGCGACAGGGGGCCGATGTCCGGCCCCGCCG
CACGCAGGATTCCGCCATGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MPAPAQERSELFRADDLGALECLDAQYAERTFPPHFHEEFVVNTLTLGAQSYRHRGGLHRAGVGALVLINPGEVHTGETA
HENGWAYRGFYPGVDMIGGLAADLNGKAGLPYFRDTVVVDPGLAGRLDGLHLLLRDSHDALRRESALAAVFSEVLVKYMR
LQPDEQASAPTAVETVRQMLADDPAANHSLQQLAAAVGLSPWQLCRQFKRETGLPPVAWRNQLRVARARKLLAAGMRPGA
AALELGFADQPHLTRAFQQALGVTPAAYQKAVGARAG

Sequences:

>Translated_277_residues
MPAPAQERSELFRADDLGALECLDAQYAERTFPPHFHEEFVVNTLTLGAQSYRHRGGLHRAGVGALVLINPGEVHTGETA
HENGWAYRGFYPGVDMIGGLAADLNGKAGLPYFRDTVVVDPGLAGRLDGLHLLLRDSHDALRRESALAAVFSEVLVKYMR
LQPDEQASAPTAVETVRQMLADDPAANHSLQQLAAAVGLSPWQLCRQFKRETGLPPVAWRNQLRVARARKLLAAGMRPGA
AALELGFADQPHLTRAFQQALGVTPAAYQKAVGARAG
>Mature_276_residues
PAPAQERSELFRADDLGALECLDAQYAERTFPPHFHEEFVVNTLTLGAQSYRHRGGLHRAGVGALVLINPGEVHTGETAH
ENGWAYRGFYPGVDMIGGLAADLNGKAGLPYFRDTVVVDPGLAGRLDGLHLLLRDSHDALRRESALAAVFSEVLVKYMRL
QPDEQASAPTAVETVRQMLADDPAANHSLQQLAAAVGLSPWQLCRQFKRETGLPPVAWRNQLRVARARKLLAAGMRPGAA
ALELGFADQPHLTRAFQQALGVTPAAYQKAVGARAG

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29953; Mature: 29822

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPAQERSELFRADDLGALECLDAQYAERTFPPHFHEEFVVNTLTLGAQSYRHRGGLHR
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
AGVGALVLINPGEVHTGETAHENGWAYRGFYPGVDMIGGLAADLNGKAGLPYFRDTVVVD
CCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCHHCCEEEEC
PGLAGRLDGLHLLLRDSHDALRRESALAAVFSEVLVKYMRLQPDEQASAPTAVETVRQML
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHH
ADDPAANHSLQQLAAAVGLSPWQLCRQFKRETGLPPVAWRNQLRVARARKLLAAGMRPGA
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
AALELGFADQPHLTRAFQQALGVTPAAYQKAVGARAG
HHEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
PAPAQERSELFRADDLGALECLDAQYAERTFPPHFHEEFVVNTLTLGAQSYRHRGGLHR
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
AGVGALVLINPGEVHTGETAHENGWAYRGFYPGVDMIGGLAADLNGKAGLPYFRDTVVVD
CCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCHHCCEEEEC
PGLAGRLDGLHLLLRDSHDALRRESALAAVFSEVLVKYMRLQPDEQASAPTAVETVRQML
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHH
ADDPAANHSLQQLAAAVGLSPWQLCRQFKRETGLPPVAWRNQLRVARARKLLAAGMRPGA
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
AALELGFADQPHLTRAFQQALGVTPAAYQKAVGARAG
HHEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]