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The map label for this gene is oppB [H]

Identifier: 34499783

GI number: 34499783

Start: 4668771

End: 4669691

Strand: Reverse

Name: oppB [H]

Synonym: CV_4328

Alternate gene names: 34499783

Gene position: 4669691-4668771 (Counterclockwise)

Preceding gene: 34499784

Following gene: 34499782

Centisome position: 98.29

GC content: 63.74

Gene sequence:

>921_bases
ATGTGGTCCTACACTTTCCGACGCATCCTGGCGGCGATTCCGACGCTGCTGGCCGTCATCACCGTTTGCTATCTGCTGCT
GCACATGACCCCGGGCGGCCCGTTCGACGGAGAACGCAAGGTCTCCGAGGCGGTGCTGGCCAATCTGCAGGCCAAGTATC
ATCTGGATCTGCCGCTGTGGCAGCAATACCTGTATTACCTGAATAGCCTGCTGCACGGCGATCTGGGCGCCTCGTTCCGC
TACGCGGACTGGAGCGTCAACGATCTGGTGGCCAGCGCCTTGCCGGTTTCCGCCACCATAGGCGGCAGCGCCATCCTGAT
CTCGCTGTTCATCGGCGTCGCGCTCGGCATCACCGCCGCGCTGCGCCAGAACAGCATGGTCGACTATTTCGTGATGTTTC
TCGGCAATATCGGCGGCGCCTTCCCGTCCTTCATCCTGGGGCCGGTGTTGGTGCTGATTTTCGCCGTGACGCTGAAGTGG
CTGCCGGCCGGCGGCTGGAACCACTTCGCGCCCAAGTTCATGGTGCTGCCGATCATGCTGCTGGTGTTCATCAACATCTC
CACGATAGGCCGCGTGATGCGCGGCAGCCTGATCGAGGTGCTGAACAGCAACTTCATCCGCACCGCCCGCGCCAAGGGCC
TGCCGCTGCGCGTCATCGTGCTGCGCCACGCGCTGAAGCCGGCCCTGATGCCGGTGGTGACGCTGCTGGGGCCGCTGGCG
ATCTCGTCCATCACCTCCGCCGTGGTGACCGAGTCGATCTTCTCGCTGCCGGGCCTGGGCAAGCTGATCGTCAACGGCGC
GTCCAACCGCGATTACACGCTGGTGCTGGGCCTGGTGGTGCTGGTGACGGTGATCACCGTGGTGTTCAACCTCCTCGTCG
ACCTGGCTTACGCCGTGCTCGACCCCAAGATCCGCTATTGA

Upstream 100 bases:

>100_bases
CAACCGAGGCCGGATGTCCGCGCGAGCGGCCATCCGGCTTGTGATGTAGGGGCTGGGCCGCGGTGCGCGAGGCATCCGCC
CGGCCATACGGAGTTACACC

Downstream 100 bases:

>100_bases
GGAGGCGGGGAAATGATCAAGAGCAAGCAAGCCGCCGCCGTGGCGGCAATCGAGAATGGCCTGGCCGAGGCCGCGGTGGA
AGGCCGCAGCCCGTGGCGCG

Product: oligopeptide transport system permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MWSYTFRRILAAIPTLLAVITVCYLLLHMTPGGPFDGERKVSEAVLANLQAKYHLDLPLWQQYLYYLNSLLHGDLGASFR
YADWSVNDLVASALPVSATIGGSAILISLFIGVALGITAALRQNSMVDYFVMFLGNIGGAFPSFILGPVLVLIFAVTLKW
LPAGGWNHFAPKFMVLPIMLLVFINISTIGRVMRGSLIEVLNSNFIRTARAKGLPLRVIVLRHALKPALMPVVTLLGPLA
ISSITSAVVTESIFSLPGLGKLIVNGASNRDYTLVLGLVVLVTVITVVFNLLVDLAYAVLDPKIRY

Sequences:

>Translated_306_residues
MWSYTFRRILAAIPTLLAVITVCYLLLHMTPGGPFDGERKVSEAVLANLQAKYHLDLPLWQQYLYYLNSLLHGDLGASFR
YADWSVNDLVASALPVSATIGGSAILISLFIGVALGITAALRQNSMVDYFVMFLGNIGGAFPSFILGPVLVLIFAVTLKW
LPAGGWNHFAPKFMVLPIMLLVFINISTIGRVMRGSLIEVLNSNFIRTARAKGLPLRVIVLRHALKPALMPVVTLLGPLA
ISSITSAVVTESIFSLPGLGKLIVNGASNRDYTLVLGLVVLVTVITVVFNLLVDLAYAVLDPKIRY
>Mature_306_residues
MWSYTFRRILAAIPTLLAVITVCYLLLHMTPGGPFDGERKVSEAVLANLQAKYHLDLPLWQQYLYYLNSLLHGDLGASFR
YADWSVNDLVASALPVSATIGGSAILISLFIGVALGITAALRQNSMVDYFVMFLGNIGGAFPSFILGPVLVLIFAVTLKW
LPAGGWNHFAPKFMVLPIMLLVFINISTIGRVMRGSLIEVLNSNFIRTARAKGLPLRVIVLRHALKPALMPVVTLLGPLA
ISSITSAVVTESIFSLPGLGKLIVNGASNRDYTLVLGLVVLVTVITVVFNLLVDLAYAVLDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=54.9019607843137, Blast_Score=354, Evalue=3e-99,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=33.1360946745562, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=33.1189710610932, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789888, Length=313, Percent_Identity=33.5463258785943, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1787761, Length=333, Percent_Identity=32.1321321321321, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=26.7217630853994, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787550, Length=328, Percent_Identity=26.219512195122, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33266; Mature: 33266

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSYTFRRILAAIPTLLAVITVCYLLLHMTPGGPFDGERKVSEAVLANLQAKYHLDLPLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCHHH
QQYLYYLNSLLHGDLGASFRYADWSVNDLVASALPVSATIGGSAILISLFIGVALGITAA
HHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHH
LRQNSMVDYFVMFLGNIGGAFPSFILGPVLVLIFAVTLKWLPAGGWNHFAPKFMVLPIML
HHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHH
LVFINISTIGRVMRGSLIEVLNSNFIRTARAKGLPLRVIVLRHALKPALMPVVTLLGPLA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISSITSAVVTESIFSLPGLGKLIVNGASNRDYTLVLGLVVLVTVITVVFNLLVDLAYAVL
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MWSYTFRRILAAIPTLLAVITVCYLLLHMTPGGPFDGERKVSEAVLANLQAKYHLDLPLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCHHH
QQYLYYLNSLLHGDLGASFRYADWSVNDLVASALPVSATIGGSAILISLFIGVALGITAA
HHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHH
LRQNSMVDYFVMFLGNIGGAFPSFILGPVLVLIFAVTLKWLPAGGWNHFAPKFMVLPIML
HHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHH
LVFINISTIGRVMRGSLIEVLNSNFIRTARAKGLPLRVIVLRHALKPALMPVVTLLGPLA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISSITSAVVTESIFSLPGLGKLIVNGASNRDYTLVLGLVVLVTVITVVFNLLVDLAYAVL
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]