| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499765
Identifier: 34499765
GI number: 34499765
Start: 4652368
End: 4652973
Strand: Reverse
Name: 34499765
Synonym: CV_4310
Alternate gene names: NA
Gene position: 4652973-4652368 (Counterclockwise)
Preceding gene: 34499767
Following gene: 34499764
Centisome position: 97.94
GC content: 72.61
Gene sequence:
>606_bases ATGCCAGATATTCCGCAGCCGCGCAAACAGCCGCGCCAGGACCGCTCCCGCCATGCCGTCGCCGCCATTCTGGAGGCGGC GGCTCGCATTCTGGCCATCGACGGCTATGCCGCCTTCAACACCAACCGCGTCGCCGAGCTGGCCGGCGTCGGCATCGGCT CGCTGTACCAGTACTTTCCCAACAAGCAGGCCTTGCTGGCCGCGCTGCACCGCCGCCACGGCGAGGAGACGCTGGCGGCG CTGGACGACGCGCTGGCGCGCAGCGCCGGCCGGTCCGCCCGGGAACAGCTGGCGGCGATGGTGGCGGCGGCGCTGGATCT GCACCGGCGAGAGCTGGGGCTGCACCGGGTGCTGGAGCGCGAATGGCCGATCTACGACGAGCCGCCGGCCAGCAATCCTA TCGACGCCGCGCTGCGCGCGCGGGTGGCCGGCTGGCTGGCCGCCATCGGCGCGGATCCCGCGCGGGCGGAGCGGCTGCTG CGGATGGCCGACAGCCTGGTGCATGGCCTGCTGCTGGACGCCGATCCGCAGGCCGAGGCGCTGGAAGACGCGATTACCGA CGCGCTGGCGGGTTATCTGGCCCTGCCCGCGCGGCAACACACTTGA
Upstream 100 bases:
>100_bases CGATGCTCCTGCATGGAATAAGGGGAAGGCGGGCCGGCTCCGCTCAGCCATTAATGTAGGCGCGCTTGCGATGGCGGAAA ACTCGTGTTTAGCTAGGCCC
Downstream 100 bases:
>100_bases GGAGAAGCGCAGATGCAGTGGATAGACCTTCGCAGCGATACCGTCACCCATCCGACCCCGGCGATGCGCCGCGCGATGGC CGAGGCCGAAGTCGGCGACG
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulatory Protein; Transcription Regulator Protein; Kregulator TetR Family; Transcriptional Regulator TetR Family Protein; TetR Family Transcriptional Regulatory Protein; Transcriptional Regulator Protein; Regulatory Protein TetR; TetR Family Regulatory
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MPDIPQPRKQPRQDRSRHAVAAILEAAARILAIDGYAAFNTNRVAELAGVGIGSLYQYFPNKQALLAALHRRHGEETLAA LDDALARSAGRSAREQLAAMVAAALDLHRRELGLHRVLEREWPIYDEPPASNPIDAALRARVAGWLAAIGADPARAERLL RMADSLVHGLLLDADPQAEALEDAITDALAGYLALPARQHT
Sequences:
>Translated_201_residues MPDIPQPRKQPRQDRSRHAVAAILEAAARILAIDGYAAFNTNRVAELAGVGIGSLYQYFPNKQALLAALHRRHGEETLAA LDDALARSAGRSAREQLAAMVAAALDLHRRELGLHRVLEREWPIYDEPPASNPIDAALRARVAGWLAAIGADPARAERLL RMADSLVHGLLLDADPQAEALEDAITDALAGYLALPARQHT >Mature_200_residues PDIPQPRKQPRQDRSRHAVAAILEAAARILAIDGYAAFNTNRVAELAGVGIGSLYQYFPNKQALLAALHRRHGEETLAAL DDALARSAGRSAREQLAAMVAAALDLHRRELGLHRVLEREWPIYDEPPASNPIDAALRARVAGWLAAIGADPARAERLLR MADSLVHGLLLDADPQAEALEDAITDALAGYLALPARQHT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21761; Mature: 21630
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDIPQPRKQPRQDRSRHAVAAILEAAARILAIDGYAAFNTNRVAELAGVGIGSLYQYFP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCHHHHHHHCC NKQALLAALHRRHGEETLAALDDALARSAGRSAREQLAAMVAAALDLHRRELGLHRVLER CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EWPIYDEPPASNPIDAALRARVAGWLAAIGADPARAERLLRMADSLVHGLLLDADPQAEA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH LEDAITDALAGYLALPARQHT HHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PDIPQPRKQPRQDRSRHAVAAILEAAARILAIDGYAAFNTNRVAELAGVGIGSLYQYFP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCHHHHHHHCC NKQALLAALHRRHGEETLAALDDALARSAGRSAREQLAAMVAAALDLHRRELGLHRVLER CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EWPIYDEPPASNPIDAALRARVAGWLAAIGADPARAERLLRMADSLVHGLLLDADPQAEA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH LEDAITDALAGYLALPARQHT HHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA