| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is atoS [H]
Identifier: 34499715
GI number: 34499715
Start: 4593548
End: 4595659
Strand: Reverse
Name: atoS [H]
Synonym: CV_4260
Alternate gene names: 34499715
Gene position: 4595659-4593548 (Counterclockwise)
Preceding gene: 34499716
Following gene: 34499714
Centisome position: 96.73
GC content: 65.39
Gene sequence:
>2112_bases ATGCGCTACGCCACCATCGCGATGGCGACGGTCGGGGCCATCCTGCTGTATCTGCTGGCGGTGGCCACCGGCAACGCGTC CAAGCTCAACGATTACTACTGGTGGGTGTTCGGGCTGAACAGCCTGCTGCTGCTGGCCCTGCTGGGCGTGGTGGGCCGCC AGCTGCTGCGCTTGCGGCAGCGGGTGCGGAACCGCGTGTTCGGCGCCAAGCTGACGCAGAAGCTGGCGCTGATGTTCGCC GGCGTCGCGCTGGTGCCCGGCCTGCTGGTGTTCACCGTGTCCGCCCAGTTCCTGACCCGCAGCATCGAGAGCTGGTTCGA CGTGCGTGTCGAGGCGGCGCTGGACCGCGGCCTGGTGCTGGGCCGCAGCGCGCTCAACTACGTGCTGGACGATGTCGGCC GCAAGGGGCGGATGGTGCAGGAGGAAGTGGAGCCGCTGTCGGACGGCGTGCTGCCGGTGCGGCTGGAGCGGCTGCGCGAG CAGCTGGGGCTGAAGGAAATCGCCGTTTTCAATCGCGGCAACGGCCAGTTGTTGGCCTTCGCCGGCGGCGATGCGCGCAA GCTGCCGCAATCGCCCGGCCATGAGGCGCTGCGCGCGGTCAAGCTGCGCACGCCGCAGCAGAGCATAGAAAACGACGGCA ACAATGGCCTGGCCTTGAAAGTTTTGCTTGCCTACCGCGGGCCGGGCGAGCAAACCCGCGTGCTGCAATTGCTGCAGGCG GCGCCGGCCGACATCAGCCGCGACGCCGAGCAGATAGAAAGCGCGCGCTCCGAATACCGCCAGTTGCTGCTGGCGCGCCA GGGCCTGCGCACCTTCTACATGCTGACGCTGGCGCTGGCGGTGCTGCTGGCGCTGACGGCGGCGCTGGCCTTCGCGCTGT TCCTGTCCGAGCGGTTGTCCGCGCCGCTGTCCGAGCTGGCCGCCGGCACCCGCGCGGTGGCGCAGGGCGACTTCTCCAAG CGCCACCCGGTGTACCGGCGCGACGAATTGGGCATGCTGACCACGCTGTTCAACCGCATGACGCAGCAATTGGACGAGGC GCGGCAGGTGGCGGAAAAGAGCCGCGGCGAGCTGGAAGGCGGCAAGCTTTATCTGGAAAGCATACTGGCCAATCTGTCGG CCGGCGTCATTGCTTTTAGCGGCGACTGGCATATCCGGGCCGCCAATACCAGCGCTTCGCGCATTCTGGGCGTGGATTTC AGCCAGTTGGCCGAGCACCGCTTCCCGGAGTGGGGCGGCGTGATGCCGGCGGTGGCCAGCCTGGTGGAAACGGTGATGCA GCACGCGGACAGCGACGTGGAGAGCGACTGGCAGACCCAGCTCGGCTATGACACCGCCCAGGGCGAGCGCACGCTGCTGG TGCGCGGCGCGCGGCTGCCCGAGCATTCCAGCGACGGCTACGTGCTGGTGTTCAACGACATCACCGAGCTGGCCCGCGCC CAGCGCGACGCGGCCTGGGGCGAGGTGGCCAAGCGGCTGGCGCATGAGATCCGCAACCCGCTGACGCCCATCCAGCTGTC CGCCGAGCGGCTGGCGATGAAGCTGGCCGACAAGCTGGAAGGGCCGGATGCCGACATGCTCAAGCGCTCCACCGACACCA TCATCAAGCAGGTGGGCGCGTTGAAAAGCATGGTGGAAGCTTTCCGCGACTATGCTCGCGCGCCCAAGATCAAACTGGTG AAACTTGATCTCAATCAGGTGATCCGGGAGGTCATGGCTCTTTACGAATCCAATCCTGCTGTTAAGATTGCGCTGGACGA AGTTCCGCTGATGATCATGGGGGATGCGGCTCTGCTGCGCCAGGTGCTGCATAACCTGATGCAAAACGCTCAGGATGCAG TCCTTGACGTTGGCATCCCGATGATTCAAATTAGCAGCCGACAAGAAGAAGGAAACGCGCTCGTTTGCGTCGAGGACAAT GGCGCGGGCTTCGGCCCGGACATTCTCAGGCGCGCGTTCGAGCCGTACGTGACCAGTAAAGCCAAGGGAACCGGTCTAGG ACTGGCCGTGGTCAAGAAGATTATGGAAGAACACCATGGACAGGTCATTTTGGGGAACGCCGAGCAGCAAGGCGCGCGTG TCCTTCTCTCCCTGCCATTGCTGGAGGCCTAA
Upstream 100 bases:
>100_bases TCGGCGAATTGCCCAAGCCGTTCCAGATGAACGCGCTGGGCTCGGACGACTGGTCGCTGGATTCCGGCTGGGTCAAGCTG GACGTCAAGGACGCCGGCTG
Downstream 100 bases:
>100_bases TGCGTAGCAGCGATATTTTGATTGTGGACGACGAGATCGGCATCCGAGAACTGCTCTCCGAGATCCTGCAGGATGAAGGT TATACCGTGGCCCTGGCGGA
Product: sensor protein atoS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 703; Mature: 703
Protein sequence:
>703_residues MRYATIAMATVGAILLYLLAVATGNASKLNDYYWWVFGLNSLLLLALLGVVGRQLLRLRQRVRNRVFGAKLTQKLALMFA GVALVPGLLVFTVSAQFLTRSIESWFDVRVEAALDRGLVLGRSALNYVLDDVGRKGRMVQEEVEPLSDGVLPVRLERLRE QLGLKEIAVFNRGNGQLLAFAGGDARKLPQSPGHEALRAVKLRTPQQSIENDGNNGLALKVLLAYRGPGEQTRVLQLLQA APADISRDAEQIESARSEYRQLLLARQGLRTFYMLTLALAVLLALTAALAFALFLSERLSAPLSELAAGTRAVAQGDFSK RHPVYRRDELGMLTTLFNRMTQQLDEARQVAEKSRGELEGGKLYLESILANLSAGVIAFSGDWHIRAANTSASRILGVDF SQLAEHRFPEWGGVMPAVASLVETVMQHADSDVESDWQTQLGYDTAQGERTLLVRGARLPEHSSDGYVLVFNDITELARA QRDAAWGEVAKRLAHEIRNPLTPIQLSAERLAMKLADKLEGPDADMLKRSTDTIIKQVGALKSMVEAFRDYARAPKIKLV KLDLNQVIREVMALYESNPAVKIALDEVPLMIMGDAALLRQVLHNLMQNAQDAVLDVGIPMIQISSRQEEGNALVCVEDN GAGFGPDILRRAFEPYVTSKAKGTGLGLAVVKKIMEEHHGQVILGNAEQQGARVLLSLPLLEA
Sequences:
>Translated_703_residues MRYATIAMATVGAILLYLLAVATGNASKLNDYYWWVFGLNSLLLLALLGVVGRQLLRLRQRVRNRVFGAKLTQKLALMFA GVALVPGLLVFTVSAQFLTRSIESWFDVRVEAALDRGLVLGRSALNYVLDDVGRKGRMVQEEVEPLSDGVLPVRLERLRE QLGLKEIAVFNRGNGQLLAFAGGDARKLPQSPGHEALRAVKLRTPQQSIENDGNNGLALKVLLAYRGPGEQTRVLQLLQA APADISRDAEQIESARSEYRQLLLARQGLRTFYMLTLALAVLLALTAALAFALFLSERLSAPLSELAAGTRAVAQGDFSK RHPVYRRDELGMLTTLFNRMTQQLDEARQVAEKSRGELEGGKLYLESILANLSAGVIAFSGDWHIRAANTSASRILGVDF SQLAEHRFPEWGGVMPAVASLVETVMQHADSDVESDWQTQLGYDTAQGERTLLVRGARLPEHSSDGYVLVFNDITELARA QRDAAWGEVAKRLAHEIRNPLTPIQLSAERLAMKLADKLEGPDADMLKRSTDTIIKQVGALKSMVEAFRDYARAPKIKLV KLDLNQVIREVMALYESNPAVKIALDEVPLMIMGDAALLRQVLHNLMQNAQDAVLDVGIPMIQISSRQEEGNALVCVEDN GAGFGPDILRRAFEPYVTSKAKGTGLGLAVVKKIMEEHHGQVILGNAEQQGARVLLSLPLLEA >Mature_703_residues MRYATIAMATVGAILLYLLAVATGNASKLNDYYWWVFGLNSLLLLALLGVVGRQLLRLRQRVRNRVFGAKLTQKLALMFA GVALVPGLLVFTVSAQFLTRSIESWFDVRVEAALDRGLVLGRSALNYVLDDVGRKGRMVQEEVEPLSDGVLPVRLERLRE QLGLKEIAVFNRGNGQLLAFAGGDARKLPQSPGHEALRAVKLRTPQQSIENDGNNGLALKVLLAYRGPGEQTRVLQLLQA APADISRDAEQIESARSEYRQLLLARQGLRTFYMLTLALAVLLALTAALAFALFLSERLSAPLSELAAGTRAVAQGDFSK RHPVYRRDELGMLTTLFNRMTQQLDEARQVAEKSRGELEGGKLYLESILANLSAGVIAFSGDWHIRAANTSASRILGVDF SQLAEHRFPEWGGVMPAVASLVETVMQHADSDVESDWQTQLGYDTAQGERTLLVRGARLPEHSSDGYVLVFNDITELARA QRDAAWGEVAKRLAHEIRNPLTPIQLSAERLAMKLADKLEGPDADMLKRSTDTIIKQVGALKSMVEAFRDYARAPKIKLV KLDLNQVIREVMALYESNPAVKIALDEVPLMIMGDAALLRQVLHNLMQNAQDAVLDVGIPMIQISSRQEEGNALVCVEDN GAGFGPDILRRAFEPYVTSKAKGTGLGLAVVKKIMEEHHGQVILGNAEQQGARVLLSLPLLEA
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=423, Percent_Identity=24.5862884160757, Blast_Score=112, Evalue=8e-26, Organism=Escherichia coli, GI1790436, Length=231, Percent_Identity=31.1688311688312, Blast_Score=99, Evalue=8e-22, Organism=Escherichia coli, GI1789808, Length=216, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1790861, Length=220, Percent_Identity=30.4545454545455, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1790300, Length=222, Percent_Identity=29.2792792792793, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1790551, Length=220, Percent_Identity=30, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI87081816, Length=215, Percent_Identity=28.3720930232558, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786912, Length=217, Percent_Identity=27.1889400921659, Blast_Score=62, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 77153; Mature: 77153
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYATIAMATVGAILLYLLAVATGNASKLNDYYWWVFGLNSLLLLALLGVVGRQLLRLRQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVRNRVFGAKLTQKLALMFAGVALVPGLLVFTVSAQFLTRSIESWFDVRVEAALDRGLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH GRSALNYVLDDVGRKGRMVQEEVEPLSDGVLPVRLERLREQLGLKEIAVFNRGNGQLLAF HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHEEECCCCEEEEE AGGDARKLPQSPGHEALRAVKLRTPQQSIENDGNNGLALKVLLAYRGPGEQTRVLQLLQA ECCCHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH APADISRDAEQIESARSEYRQLLLARQGLRTFYMLTLALAVLLALTAALAFALFLSERLS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APLSELAAGTRAVAQGDFSKRHPVYRRDELGMLTTLFNRMTQQLDEARQVAEKSRGELEG CCHHHHHHCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GKLYLESILANLSAGVIAFSGDWHIRAANTSASRILGVDFSQLAEHRFPEWGGVMPAVAS HHHHHHHHHHHHCCCEEEECCCEEEEECCCCCHHEECCCHHHHHHHCCCCCCCHHHHHHH LVETVMQHADSDVESDWQTQLGYDTAQGERTLLVRGARLPEHSSDGYVLVFNDITELARA HHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHHHH QRDAAWGEVAKRLAHEIRNPLTPIQLSAERLAMKLADKLEGPDADMLKRSTDTIIKQVGA HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH LKSMVEAFRDYARAPKIKLVKLDLNQVIREVMALYESNPAVKIALDEVPLMIMGDAALLR HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCHHHHH QVLHNLMQNAQDAVLDVGIPMIQISSRQEEGNALVCVEDNGAGFGPDILRRAFEPYVTSK HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC AKGTGLGLAVVKKIMEEHHGQVILGNAEQQGARVLLSLPLLEA CCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCC >Mature Secondary Structure MRYATIAMATVGAILLYLLAVATGNASKLNDYYWWVFGLNSLLLLALLGVVGRQLLRLRQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVRNRVFGAKLTQKLALMFAGVALVPGLLVFTVSAQFLTRSIESWFDVRVEAALDRGLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH GRSALNYVLDDVGRKGRMVQEEVEPLSDGVLPVRLERLREQLGLKEIAVFNRGNGQLLAF HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHEEECCCCEEEEE AGGDARKLPQSPGHEALRAVKLRTPQQSIENDGNNGLALKVLLAYRGPGEQTRVLQLLQA ECCCHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH APADISRDAEQIESARSEYRQLLLARQGLRTFYMLTLALAVLLALTAALAFALFLSERLS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APLSELAAGTRAVAQGDFSKRHPVYRRDELGMLTTLFNRMTQQLDEARQVAEKSRGELEG CCHHHHHHCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GKLYLESILANLSAGVIAFSGDWHIRAANTSASRILGVDFSQLAEHRFPEWGGVMPAVAS HHHHHHHHHHHHCCCEEEECCCEEEEECCCCCHHEECCCHHHHHHHCCCCCCCHHHHHHH LVETVMQHADSDVESDWQTQLGYDTAQGERTLLVRGARLPEHSSDGYVLVFNDITELARA HHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHHHH QRDAAWGEVAKRLAHEIRNPLTPIQLSAERLAMKLADKLEGPDADMLKRSTDTIIKQVGA HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH LKSMVEAFRDYARAPKIKLVKLDLNQVIREVMALYESNPAVKIALDEVPLMIMGDAALLR HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCHHHHH QVLHNLMQNAQDAVLDVGIPMIQISSRQEEGNALVCVEDNGAGFGPDILRRAFEPYVTSK HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC AKGTGLGLAVVKKIMEEHHGQVILGNAEQQGARVLLSLPLLEA CCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]