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The map label for this gene is ubiD

Identifier: 34499559

GI number: 34499559

Start: 4445768

End: 4447243

Strand: Direct

Name: ubiD

Synonym: CV_4104

Alternate gene names: 34499559

Gene position: 4445768-4447243 (Clockwise)

Preceding gene: 34499553

Following gene: 34499563

Centisome position: 93.57

GC content: 64.57

Gene sequence:

>1476_bases
ATGAAATATGCCGATCTACGGGAATTCATTGCCCAACTTGAACAAAAACAGCTGCTGAAGCGCATCAAGACGCCAGTCTC
CCCGCATCTGGAAATGACCGAAATCGGCGACCGCGTGCTGAAGGCAGGCGGTCCGGCGCTGCTGTTCGAGCAGCCGGTCG
ACAACGGCCGCCGCTACGACTTCCCCGTGCTGGCCAATCTGTTCGGCACGCCCGAGCGCGTGGCGATGGGCATGGGTGCA
GACGACGTGATGCAGCTCAGGGAGATAGGCAGGACGCTGGCCTACCTGAAGGAGCCGGAGCCGCCCAAGGGCCTGAAAGA
CGCCTGGGACAAGCTGCCGCTGTTGAAGCAGGTGCTGTCGATGGCGCCCAAGGAAGTGAAAAAGGCGCCGTGCCAGGACA
TCGTCTGGGAAGGCGAGGCGGTGGACCTTGGCAAGCTGCCGATCCAGCACTGCTGGCCCGGCGACGCCGCGCCGCTGATC
ACCTGGGGCCTGACCGTCACCCGCGGCCCCAACAAGAAGCGGCAGAACCTCGGCATCTACCGCCAGCAGGTGATAGGCAA
GAACCGCGTGATCATGCGCTGGCTGGCCCACCGCGGCGGCGCGCTCGATTACCGCGAATTCCGCCAGCAGAATCCGGATA
CGCCCTACCCGGTGGCGGTGGTGCTGGGCTGCGACCCGGCGACGATACTGGGCGCGGTGACGCCGGTGCCGGACACGCTG
TCCGAATACCAGTTCGCCGGCCTGTTGCGCGGCAGCCGTACCGAGCTGGCGCAATGCCTGGGGTCGGACCTGCAAGTGCC
CGCCCGCGCCGAAATCGTGCTCGAAGGCCATATCCACCCGAACGACATGGCGCTGGAAGGCCCCTACGGTGACCATACCG
GCTACTACAACGAGCAGGACAGCTTCCCGGTGCTGACCATAGACCGGATCACGATGCGCGAGAATCCGATCTACCACAGC
ACCTACACCGGCAAGCCGCCGGACGAGCCGGCGATCCTGGGCGTGGCGCTGAACGAAGTGTTCGTGCCCATCCTGCAGAA
GCAGTTCCCGGAAATCGTCGACTTCTACCTGCCGCCGGAAGGCTGCAGCTACCGCATGGCCATCGTCAGCATCAAGAAGC
AGTACCCCGGCCACGCCAAGCGGGTGATGATGGGCTGCTGGAGCTTTTTGCGCCAGTTCATGTACACCAAGTTCATCGTG
GTGGTGGACGACGACGTCAACACCCGCGACTGGAAAGAAGTGATCTGGGCGATCACCACCCGGATGGACCCGGTGCGCGA
CACCACGCTGATCGACCACACGCCCATCGACTACCTGGACTTCGCCAGCCCGATCTCCGGCCTGGGCGGCAAGATGGGCC
TGGACGCCACCAACAAGATGCCGGGCGAAACCAGCCGCGAATGGGGCACGCCCATCGTGATGGACGACGCGGTCAAGGCG
CGCGTCGACGCGCTGTGGAGCGAGCTCGGGCTGTGA

Upstream 100 bases:

>100_bases
CGGCGTTGACAGCCGAACACGCCGGCAGTAGCGTGCGACGTCCGCAGGCAGATTATCCAAGCCCCTCCTCTCACACTTTG
CGTCAGATCATGAAACAGTC

Downstream 100 bases:

>100_bases
CGTTACGCGGCCAGAACCGAGCCGGGCGCGCGCCCGGCTTTTTCATGCCCGCGACCGCGTCACGCCGGAAGGCGGCGCGC
GGTGGCCAGCCACGCGATCG

Product: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKYADLREFIAQLEQKQLLKRIKTPVSPHLEMTEIGDRVLKAGGPALLFEQPVDNGRRYDFPVLANLFGTPERVAMGMGA
DDVMQLREIGRTLAYLKEPEPPKGLKDAWDKLPLLKQVLSMAPKEVKKAPCQDIVWEGEAVDLGKLPIQHCWPGDAAPLI
TWGLTVTRGPNKKRQNLGIYRQQVIGKNRVIMRWLAHRGGALDYREFRQQNPDTPYPVAVVLGCDPATILGAVTPVPDTL
SEYQFAGLLRGSRTELAQCLGSDLQVPARAEIVLEGHIHPNDMALEGPYGDHTGYYNEQDSFPVLTIDRITMRENPIYHS
TYTGKPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAIVSIKKQYPGHAKRVMMGCWSFLRQFMYTKFIV
VVDDDVNTRDWKEVIWAITTRMDPVRDTTLIDHTPIDYLDFASPISGLGGKMGLDATNKMPGETSREWGTPIVMDDAVKA
RVDALWSELGL

Sequences:

>Translated_491_residues
MKYADLREFIAQLEQKQLLKRIKTPVSPHLEMTEIGDRVLKAGGPALLFEQPVDNGRRYDFPVLANLFGTPERVAMGMGA
DDVMQLREIGRTLAYLKEPEPPKGLKDAWDKLPLLKQVLSMAPKEVKKAPCQDIVWEGEAVDLGKLPIQHCWPGDAAPLI
TWGLTVTRGPNKKRQNLGIYRQQVIGKNRVIMRWLAHRGGALDYREFRQQNPDTPYPVAVVLGCDPATILGAVTPVPDTL
SEYQFAGLLRGSRTELAQCLGSDLQVPARAEIVLEGHIHPNDMALEGPYGDHTGYYNEQDSFPVLTIDRITMRENPIYHS
TYTGKPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAIVSIKKQYPGHAKRVMMGCWSFLRQFMYTKFIV
VVDDDVNTRDWKEVIWAITTRMDPVRDTTLIDHTPIDYLDFASPISGLGGKMGLDATNKMPGETSREWGTPIVMDDAVKA
RVDALWSELGL
>Mature_491_residues
MKYADLREFIAQLEQKQLLKRIKTPVSPHLEMTEIGDRVLKAGGPALLFEQPVDNGRRYDFPVLANLFGTPERVAMGMGA
DDVMQLREIGRTLAYLKEPEPPKGLKDAWDKLPLLKQVLSMAPKEVKKAPCQDIVWEGEAVDLGKLPIQHCWPGDAAPLI
TWGLTVTRGPNKKRQNLGIYRQQVIGKNRVIMRWLAHRGGALDYREFRQQNPDTPYPVAVVLGCDPATILGAVTPVPDTL
SEYQFAGLLRGSRTELAQCLGSDLQVPARAEIVLEGHIHPNDMALEGPYGDHTGYYNEQDSFPVLTIDRITMRENPIYHS
TYTGKPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAIVSIKKQYPGHAKRVMMGCWSFLRQFMYTKFIV
VVDDDVNTRDWKEVIWAITTRMDPVRDTTLIDHTPIDYLDFASPISGLGGKMGLDATNKMPGETSREWGTPIVMDDAVKA
RVDALWSELGL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=491, Percent_Identity=71.6904276985743, Blast_Score=743, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=449, Percent_Identity=26.2806236080178, Blast_Score=126, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_CHRVO (Q7NQN3)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903774.1
- ProteinModelPortal:   Q7NQN3
- SMR:   Q7NQN3
- GeneID:   2550554
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_4104
- NMPDR:   fig|243365.1.peg.4104
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   Q7NQN3
- BioCyc:   CVIO243365:CV_4104-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 55136; Mature: 55136

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYADLREFIAQLEQKQLLKRIKTPVSPHLEMTEIGDRVLKAGGPALLFEQPVDNGRRYD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCC
FPVLANLFGTPERVAMGMGADDVMQLREIGRTLAYLKEPEPPKGLKDAWDKLPLLKQVLS
CHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
MAPKEVKKAPCQDIVWEGEAVDLGKLPIQHCWPGDAAPLITWGLTVTRGPNKKRQNLGIY
HCHHHHHHCCCHHHEECCCCCCCCCCCHHHCCCCCCCCEEEECEEEECCCCHHHHHHHHH
RQQVIGKNRVIMRWLAHRGGALDYREFRQQNPDTPYPVAVVLGCDPATILGAVTPVPDTL
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCCHHH
SEYQFAGLLRGSRTELAQCLGSDLQVPARAEIVLEGHIHPNDMALEGPYGDHTGYYNEQD
HHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCC
SFPVLTIDRITMRENPIYHSTYTGKPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPE
CCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
GCSYRMAIVSIKKQYPGHAKRVMMGCWSFLRQFMYTKFIVVVDDDVNTRDWKEVIWAITT
CCCEEEHEEEHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHH
RMDPVRDTTLIDHTPIDYLDFASPISGLGGKMGLDATNKMPGETSREWGTPIVMDDAVKA
CCCCCCCCEEECCCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHCCCCEEECHHHHH
RVDALWSELGL
HHHHHHHHHCC
>Mature Secondary Structure
MKYADLREFIAQLEQKQLLKRIKTPVSPHLEMTEIGDRVLKAGGPALLFEQPVDNGRRYD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCC
FPVLANLFGTPERVAMGMGADDVMQLREIGRTLAYLKEPEPPKGLKDAWDKLPLLKQVLS
CHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
MAPKEVKKAPCQDIVWEGEAVDLGKLPIQHCWPGDAAPLITWGLTVTRGPNKKRQNLGIY
HCHHHHHHCCCHHHEECCCCCCCCCCCHHHCCCCCCCCEEEECEEEECCCCHHHHHHHHH
RQQVIGKNRVIMRWLAHRGGALDYREFRQQNPDTPYPVAVVLGCDPATILGAVTPVPDTL
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCCHHH
SEYQFAGLLRGSRTELAQCLGSDLQVPARAEIVLEGHIHPNDMALEGPYGDHTGYYNEQD
HHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCC
SFPVLTIDRITMRENPIYHSTYTGKPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPE
CCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
GCSYRMAIVSIKKQYPGHAKRVMMGCWSFLRQFMYTKFIVVVDDDVNTRDWKEVIWAITT
CCCEEEHEEEHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHH
RMDPVRDTTLIDHTPIDYLDFASPISGLGGKMGLDATNKMPGETSREWGTPIVMDDAVKA
CCCCCCCCEEECCCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHCCCCEEECHHHHH
RVDALWSELGL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14500782