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The map label for this gene is ompW [C]

Identifier: 34499558

GI number: 34499558

Start: 4445018

End: 4445665

Strand: Reverse

Name: ompW [C]

Synonym: CV_4103

Alternate gene names: 34499558

Gene position: 4445665-4445018 (Counterclockwise)

Preceding gene: 34499560

Following gene: 34499557

Centisome position: 93.57

GC content: 60.03

Gene sequence:

>648_bases
ATGGTTTATGGCGGCATTACTCGACCCATTGGAGAACAGAACATGAAGAAGCTCGCACTCGCCGCCATGATCGGCATGCT
GTCCGCAGGCGCGTTCGCCGCCCAAGGCGACATTCTGGCACGTTTCCGCGTGATCGATGTCGATCCCTCGTCCAGTTGGG
ACAATTCCGCAGTGGCCGGCCTGAACGTCGAAGGCAAGTCCGCCGTCGCGCCGGAGCTCGATTTCACCTACATGATCACC
AACAATATCGGCGCCGAGCTGATTCTTGGCACTTCCCGCCATAAGGTGACCACCAACGCCTTCGGCGATGTGGGCAAGGT
ATCGGTGCTGCCGCCGACCGTGACGCTGCAATACCATTTCACGCCGGAAGCGGCCTTCCGCCCCTATGTCGGCGCCGGCA
TCAACTACACCCGTTTCTACAGCAACGGCCTCCAATTGCCGAATGGCACCAAGCTGGACGTGAAGAACAACAGCTTCGGC
CCGGCGCTGCAGATCGGCGCCGACTACGCGGTCAACAAGAGCTGGTTCGTCAACGTCGACGTGAAGAAATTGTGGGTGAA
GACGGATGTCAGCGCCGCCGGCACCAAGCTGGGCACCTTGAAGCTCGATCCGTGGGTGTTCGGCATCGGTGTCGGCACCA
AGTTCTGA

Upstream 100 bases:

>100_bases
CTGTTTCATGATCTGACGCAAAGTGTGAGAGGAGGGGCTTGGATAATCTGCCTGCGGACGTCGCACGCTACTGCCGGCGT
GTTCGGCTGTCAACGCCGGC

Downstream 100 bases:

>100_bases
TCCGGCCAAGCCACCGGCCATGCGAGGACGCCTGCGGGCGTCCTTTTTCTTTGTGGCGGAATGTAAACGATTGATGATGT
TGACATTGCGCATGAAGTCG

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MVYGGITRPIGEQNMKKLALAAMIGMLSAGAFAAQGDILARFRVIDVDPSSSWDNSAVAGLNVEGKSAVAPELDFTYMIT
NNIGAELILGTSRHKVTTNAFGDVGKVSVLPPTVTLQYHFTPEAAFRPYVGAGINYTRFYSNGLQLPNGTKLDVKNNSFG
PALQIGADYAVNKSWFVNVDVKKLWVKTDVSAAGTKLGTLKLDPWVFGIGVGTKF

Sequences:

>Translated_215_residues
MVYGGITRPIGEQNMKKLALAAMIGMLSAGAFAAQGDILARFRVIDVDPSSSWDNSAVAGLNVEGKSAVAPELDFTYMIT
NNIGAELILGTSRHKVTTNAFGDVGKVSVLPPTVTLQYHFTPEAAFRPYVGAGINYTRFYSNGLQLPNGTKLDVKNNSFG
PALQIGADYAVNKSWFVNVDVKKLWVKTDVSAAGTKLGTLKLDPWVFGIGVGTKF
>Mature_215_residues
MVYGGITRPIGEQNMKKLALAAMIGMLSAGAFAAQGDILARFRVIDVDPSSSWDNSAVAGLNVEGKSAVAPELDFTYMIT
NNIGAELILGTSRHKVTTNAFGDVGKVSVLPPTVTLQYHFTPEAAFRPYVGAGINYTRFYSNGLQLPNGTKLDVKNNSFG
PALQIGADYAVNKSWFVNVDVKKLWVKTDVSAAGTKLGTLKLDPWVFGIGVGTKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=218, Percent_Identity=38.5321100917431, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22994; Mature: 22994

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYGGITRPIGEQNMKKLALAAMIGMLSAGAFAAQGDILARFRVIDVDPSSSWDNSAVAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEEECCCCCCCCCEEEE
LNVEGKSAVAPELDFTYMITNNIGAELILGTSRHKVTTNAFGDVGKVSVLPPTVTLQYHF
ECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCEEEECCCCCCCEEEEECCEEEEEEEE
TPEAAFRPYVGAGINYTRFYSNGLQLPNGTKLDVKNNSFGPALQIGADYAVNKSWFVNVD
CCCCCCCCCCCCCCCEEEEECCCEECCCCCEEEECCCCCCCEEEECCCEEECCEEEEEEE
VKKLWVKTDVSAAGTKLGTLKLDPWVFGIGVGTKF
HEEEEEEECCCCCCCEEEEEEECCEEEEEECCCCC
>Mature Secondary Structure
MVYGGITRPIGEQNMKKLALAAMIGMLSAGAFAAQGDILARFRVIDVDPSSSWDNSAVAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEEECCCCCCCCCEEEE
LNVEGKSAVAPELDFTYMITNNIGAELILGTSRHKVTTNAFGDVGKVSVLPPTVTLQYHF
ECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCEEEECCCCCCCEEEEECCEEEEEEEE
TPEAAFRPYVGAGINYTRFYSNGLQLPNGTKLDVKNNSFGPALQIGADYAVNKSWFVNVD
CCCCCCCCCCCCCCCEEEEECCCEECCCCCEEEECCCCCCCEEEECCCEEECCEEEEEEE
VKKLWVKTDVSAAGTKLGTLKLDPWVFGIGVGTKF
HEEEEEEECCCCCCCEEEEEEECCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]