Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 34499555

GI number: 34499555

Start: 4441790

End: 4442560

Strand: Reverse

Name: potC [H]

Synonym: CV_4100

Alternate gene names: 34499555

Gene position: 4442560-4441790 (Counterclockwise)

Preceding gene: 34499556

Following gene: 34499554

Centisome position: 93.51

GC content: 62.65

Gene sequence:

>771_bases
CTGTGGGCTTCGGCCGGCCTGACCTATCTGTTCCTCTACCTGCCGCTGGTCATCGTGGTGCTGTACTCGTTCAACGATTC
GCGGCTGAACGCCGAGTGGGTGGGTTTCACGCTGAAGTGGTACCAGAAGCTGTTCCACAACGAGAAGATGCTGACCGCGG
CCGGCAACTCGCTGCTGATCGGCATCATCGCCAGCTTCTTCGCCACCATCCTGGGCACGCTGGCTGGCATCGCGCTGCAT
AAGTACAAGCTGAGGTTGCTGCCCTTCCTGGTGCTGACGCCGATCGCCATCCCCGAGCTGCTGATGGGGGTGAGCCTGGT
GATCTTCTTCGTCATCGTCAACCAGCTGATCGGCATCCTGGAGCTGGGCTTCGTCACCATCCTGCTGTCGCACATCGCCT
TCTGCATCGGCTTCGTCGCCATCGTGGTGCGGGCGCGGATGCAGGGCATGGACGACAGCCTGGTCGAGGCGGCGCGCGAT
CTGGGTGCCACGCCGTTTCAGGCCTTCCGCCTGATCACGCTGCCGGTGATCAAGCCCGGCATCATCGCCGGCGCGCTGAT
GGCGTTCACGCTGTCCATCGACGACTTCGTGATCACCTTCTTCACCGCCGGCGCCGGCGCCAGCATGCTGCCGCTGGAGA
TCTATTCGATGATCAAGATCGCGGTGACGCCGGAAGTGAACGCAGTATCCAGCTTGTTGATGCTGCTGACGCTGGCGCTG
ATCGTGATCGCCACCAAGGTTTCGCCGAGCGCGCTGCGCGCCAACAGCTGA

Upstream 100 bases:

>100_bases
CTGTCGATCATGCTGACCGGCGGCGTGCTGCTGATCGCCGTGCTGGGGGCCGTGGTGGCCAGAAAGGGGAAGGCGCGTGG
CTAAGAAACAATCGAAATGG

Downstream 100 bases:

>100_bases
ACGGGGCGGCGCGAGCCGCCCGGCCGAATGGCCGACCCGGCGGCAAGGCGTTTTGCGTTGCAGCATAATGCCTTGCCGTC
GCCGCCGCACCCGGGCGACG

Product: polyamine transport protein PotC

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MWASAGLTYLFLYLPLVIVVLYSFNDSRLNAEWVGFTLKWYQKLFHNEKMLTAAGNSLLIGIIASFFATILGTLAGIALH
KYKLRLLPFLVLTPIAIPELLMGVSLVIFFVIVNQLIGILELGFVTILLSHIAFCIGFVAIVVRARMQGMDDSLVEAARD
LGATPFQAFRLITLPVIKPGIIAGALMAFTLSIDDFVITFFTAGAGASMLPLEIYSMIKIAVTPEVNAVSSLLMLLTLAL
IVIATKVSPSALRANS

Sequences:

>Translated_256_residues
MWASAGLTYLFLYLPLVIVVLYSFNDSRLNAEWVGFTLKWYQKLFHNEKMLTAAGNSLLIGIIASFFATILGTLAGIALH
KYKLRLLPFLVLTPIAIPELLMGVSLVIFFVIVNQLIGILELGFVTILLSHIAFCIGFVAIVVRARMQGMDDSLVEAARD
LGATPFQAFRLITLPVIKPGIIAGALMAFTLSIDDFVITFFTAGAGASMLPLEIYSMIKIAVTPEVNAVSSLLMLLTLAL
IVIATKVSPSALRANS
>Mature_256_residues
MWASAGLTYLFLYLPLVIVVLYSFNDSRLNAEWVGFTLKWYQKLFHNEKMLTAAGNSLLIGIIASFFATILGTLAGIALH
KYKLRLLPFLVLTPIAIPELLMGVSLVIFFVIVNQLIGILELGFVTILLSHIAFCIGFVAIVVRARMQGMDDSLVEAARD
LGATPFQAFRLITLPVIKPGIIAGALMAFTLSIDDFVITFFTAGAGASMLPLEIYSMIKIAVTPEVNAVSSLLMLLTLAL
IVIATKVSPSALRANS

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=237, Percent_Identity=40.084388185654, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1787081, Length=233, Percent_Identity=41.6309012875536, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1787714, Length=234, Percent_Identity=35.8974358974359, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788764, Length=175, Percent_Identity=30.2857142857143, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27783; Mature: 27783

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCHHHCCCC
>Mature Secondary Structure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HHHHHCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]