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The map label for this gene is yecS [H]

Identifier: 34499507

GI number: 34499507

Start: 4383223

End: 4383885

Strand: Reverse

Name: yecS [H]

Synonym: CV_4052

Alternate gene names: 34499507

Gene position: 4383885-4383223 (Counterclockwise)

Preceding gene: 34499508

Following gene: 34499504

Centisome position: 92.27

GC content: 68.02

Gene sequence:

>663_bases
ATGGGCGAGTGGATGGCTCTGTTCGAGGCGGCGCTGCCGGTGCTGCTGCAGGGCGCGGCGCATACGCTGCTGTTCGCGCT
GGTGGCGATGGTGCTGGGCCTGGCGCTGGGTTTCGCGGTGGCGATGGTGCGGGTGGCGAAGCTGCCGGTCTTGTCGCAGC
TGGCGGCGTTCTACGTCAGCGCGATGCGCGGCACGCCGCTCTTGGTGCAGATTTTCGTCATCTATTACGGCCTGCCCGGC
GTCGGCCTGGAACTGGACCCGGTGCCGGCCGGCGTGCTGGCCCTGACGCTGAACGTGGCGGCCTACCTGTCGGAAAGCCT
GCGCGGCGGCATCGCCGGCGTGGCCAAGGGGCAGTGGGACGCGGCGTTCTCGCTGGGCTTCACCTGGTGGCAGACGATGC
GCCACATCATCGCGCCGCAGGCGCTGCGGCTGTCGGTGCCCAGCCTGTCCAATAGCCTGATCTCGCTGATCAAGGACACC
TCGCTGGTGTCGGTGATCACCGTCACCGAGCTGATGCTGGCGACGAAAGAGGTGATCGCCCAGACCTTCCAGCCGCTGCC
GCTGTACCTGGCCGCCGCCGCCATCTATTGGCTGCTCAGCGCCTTGTTCGAGCGCTTGCAGCGCCACGTGGAAAACCGGC
TCAACCTGGCGCACCAGCGCTGA

Upstream 100 bases:

>100_bases
CCAAGGCGCCTGCCGCGGCGAAGAAATAAGCCGCTTTGTGATAGCATCGACCGCGCGCCCCTGCATTAGCGGGGGCGTCG
GTTTTTAAGGAAGGGAAGAG

Downstream 100 bases:

>100_bases
GCGTGACAGCTGGCATAGGAAAAAGCCCCGCGATGCGGGGCTTTTCGTTTACGCCGGCTCCGGCATGCCGTACATGCCGT
CTATCAAGGCGCGGCAGCGC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGEWMALFEAALPVLLQGAAHTLLFALVAMVLGLALGFAVAMVRVAKLPVLSQLAAFYVSAMRGTPLLVQIFVIYYGLPG
VGLELDPVPAGVLALTLNVAAYLSESLRGGIAGVAKGQWDAAFSLGFTWWQTMRHIIAPQALRLSVPSLSNSLISLIKDT
SLVSVITVTELMLATKEVIAQTFQPLPLYLAAAAIYWLLSALFERLQRHVENRLNLAHQR

Sequences:

>Translated_220_residues
MGEWMALFEAALPVLLQGAAHTLLFALVAMVLGLALGFAVAMVRVAKLPVLSQLAAFYVSAMRGTPLLVQIFVIYYGLPG
VGLELDPVPAGVLALTLNVAAYLSESLRGGIAGVAKGQWDAAFSLGFTWWQTMRHIIAPQALRLSVPSLSNSLISLIKDT
SLVSVITVTELMLATKEVIAQTFQPLPLYLAAAAIYWLLSALFERLQRHVENRLNLAHQR
>Mature_219_residues
GEWMALFEAALPVLLQGAAHTLLFALVAMVLGLALGFAVAMVRVAKLPVLSQLAAFYVSAMRGTPLLVQIFVIYYGLPGV
GLELDPVPAGVLALTLNVAAYLSESLRGGIAGVAKGQWDAAFSLGFTWWQTMRHIIAPQALRLSVPSLSNSLISLIKDTS
LVSVITVTELMLATKEVIAQTFQPLPLYLAAAAIYWLLSALFERLQRHVENRLNLAHQR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=215, Percent_Identity=48.3720930232558, Blast_Score=212, Evalue=1e-56,
Organism=Escherichia coli, GI1787030, Length=216, Percent_Identity=34.2592592592593, Blast_Score=133, Evalue=8e-33,
Organism=Escherichia coli, GI87082239, Length=207, Percent_Identity=32.8502415458937, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787087, Length=230, Percent_Identity=30, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787086, Length=225, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=29.3577981651376, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=32.6923076923077, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786873, Length=211, Percent_Identity=31.7535545023697, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786874, Length=212, Percent_Identity=25.9433962264151, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994930, Length=128, Percent_Identity=30.46875, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23795; Mature: 23663

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEWMALFEAALPVLLQGAAHTLLFALVAMVLGLALGFAVAMVRVAKLPVLSQLAAFYVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMRGTPLLVQIFVIYYGLPGVGLELDPVPAGVLALTLNVAAYLSESLRGGIAGVAKGQWD
HHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCH
AAFSLGFTWWQTMRHIIAPQALRLSVPSLSNSLISLIKDTSLVSVITVTELMLATKEVIA
HHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTFQPLPLYLAAAAIYWLLSALFERLQRHVENRLNLAHQR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GEWMALFEAALPVLLQGAAHTLLFALVAMVLGLALGFAVAMVRVAKLPVLSQLAAFYVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMRGTPLLVQIFVIYYGLPGVGLELDPVPAGVLALTLNVAAYLSESLRGGIAGVAKGQWD
HHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCH
AAFSLGFTWWQTMRHIIAPQALRLSVPSLSNSLISLIKDTSLVSVITVTELMLATKEVIA
HHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTFQPLPLYLAAAAIYWLLSALFERLQRHVENRLNLAHQR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]