Click here to switch to the map view.

The map label for this gene is sspB [H]

Identifier: 34499459

GI number: 34499459

Start: 4331302

End: 4331730

Strand: Reverse

Name: sspB [H]

Synonym: CV_4004

Alternate gene names: 34499459

Gene position: 4331730-4331302 (Counterclockwise)

Preceding gene: 34499460

Following gene: 34499456

Centisome position: 91.17

GC content: 65.97

Gene sequence:

>429_bases
ATGAGCTCCAGCACCAAGCCGTACATGCTGCGCGCGCTGCACCAATGGTGCGGCGACAATGGCTACACCCCGTACATCGT
GGTGTGGGTGAACAGCCGCACCGACGTGCCGCTCGAGTACGTGAAGAACAACGAGATCGTGCTCAACATCGCCGAGACCG
CGACCAAGAATCTGCGCATCGACAATGAGTGGGTTTCGTTTTCCGCCCGCTTCGGCGGCGTGTCGCGCGACATCTGGGTG
CCGATCGGCAACGTGATGTCCATCTTCGCGCGGGAAACCGGCGAGGGCATGGGGTTCGAGGTGGAGCCGATGAGCGAGGA
GGCCGCCGCGCTGCGTCCGGTGGACGCCGAGCAGGCGCCCGAATCCGGCGGCGACGACCCGACCCCGGGCCGTCCCAGCG
GCCGTCCCAGCCTGCGCATCGTCAAGTAA

Upstream 100 bases:

>100_bases
CGCGCCCATCCTGAAGTACGCCGAGCGCATCTTCCAGCGCCAGTCCTTCATCGATTCGCTGACGCCGTCCGAAAAGGCGA
TGCGCAAGTAAGGAGACGCG

Downstream 100 bases:

>100_bases
GCTTGTCTCACCATCCCAACCGGCCGCTGGCCGGTTTTTTCATGCGCCAGGCGCAAAAAAAACGGGGCCGAAGCCCCGCC
AAGTCCCTTACACAACAATC

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSSSTKPYMLRALHQWCGDNGYTPYIVVWVNSRTDVPLEYVKNNEIVLNIAETATKNLRIDNEWVSFSARFGGVSRDIWV
PIGNVMSIFARETGEGMGFEVEPMSEEAAALRPVDAEQAPESGGDDPTPGRPSGRPSLRIVK

Sequences:

>Translated_142_residues
MSSSTKPYMLRALHQWCGDNGYTPYIVVWVNSRTDVPLEYVKNNEIVLNIAETATKNLRIDNEWVSFSARFGGVSRDIWV
PIGNVMSIFARETGEGMGFEVEPMSEEAAALRPVDAEQAPESGGDDPTPGRPSGRPSLRIVK
>Mature_141_residues
SSSTKPYMLRALHQWCGDNGYTPYIVVWVNSRTDVPLEYVKNNEIVLNIAETATKNLRIDNEWVSFSARFGGVSRDIWVP
IGNVMSIFARETGEGMGFEVEPMSEEAAALRPVDAEQAPESGGDDPTPGRPSGRPSLRIVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=103, Percent_Identity=46.6019417475728, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 15702; Mature: 15571

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSTKPYMLRALHQWCGDNGYTPYIVVWVNSRTDVPLEYVKNNEIVLNIAETATKNLRI
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECCCCEEEEECCCCCCCEEE
DNEWVSFSARFGGVSRDIWVPIGNVMSIFARETGEGMGFEVEPMSEEAAALRPVDAEQAP
CCHHEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCEEECCCCCCHHHCCCCCCCCCC
ESGGDDPTPGRPSGRPSLRIVK
CCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
SSSTKPYMLRALHQWCGDNGYTPYIVVWVNSRTDVPLEYVKNNEIVLNIAETATKNLRI
CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECCCCEEEEECCCCCCCEEE
DNEWVSFSARFGGVSRDIWVPIGNVMSIFARETGEGMGFEVEPMSEEAAALRPVDAEQAP
CCHHEEEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCEEECCCCCCHHHCCCCCCCCCC
ESGGDDPTPGRPSGRPSLRIVK
CCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]