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The map label for this gene is yfdE [H]

Identifier: 34499372

GI number: 34499372

Start: 4229796

End: 4230986

Strand: Reverse

Name: yfdE [H]

Synonym: CV_3917

Alternate gene names: 34499372

Gene position: 4230986-4229796 (Counterclockwise)

Preceding gene: 34499373

Following gene: 34499371

Centisome position: 89.05

GC content: 67.59

Gene sequence:

>1191_bases
ATGGCAGGAGCGTTGTCGGGTATCAAGGTGGTGGACCTGAGCCGGGTGCTGGCCGGGCCGTGGGCCAGCCAGTTGCTGGC
GGATCTGGGCGCGGAGGTGATCAAGATAGAGAAGCCGGGCAGCGGGGACGACACCCGGCAGTGGGCGCCGCCCAGCCTGC
CGGACGGCAGGGCCGCCTATTTCCTGTGCACCAACCGCGGCAAGCGCTCGCTGACGGTGGACATCGCCCAGCCGGCCGGC
CAGGAGATCGTGCGCAAGCTGGTCGCCGACGCCGATGTGGTGCTGGAGAACTACAAGGTGGGCGGCTTGAGGAAGTACGG
GCTGGATTACGACAGCCTGAAGGCCGTCAACCCCAGGCTGGTGTATTGCTCGATCACCGGTTTCGGCCAGACCGGCCCCT
ACGCCAGCCTGGCCGGCTACGACTACATCGTGCAGGGCATGTCCGGCCTGATGAGCATCACCGGCCCGGCCGACGGCGAG
CCGCACAAGGTGGGCGTGGCGGTATCCGACCTGTTCACCGGCCTCTACGCCGCCAACGCGGTGCAGGCGGCGCTGATCGC
CCGCGAGCGCACCGGCGCCGGCCAGCACATCGACATGGCGCTGTTCGACTGCTCGCTGGCGATGCTGGCCAATGTCGCCT
CCAACTGGCTGGTCGGGCATAATGTGCCGCCGCGGCTGGGCAACGCCCACGCCAACATCGTGCCCTACCAGGTGTTCGCC
GCCTCCGACGGCCACTTCATCCTGGCCTGCGGCAACGACAAGCAGTTCGCCGAGGTGTGCCGTCTGGTCGGCCAGGCGCA
ATGGGCGCGCGATCCGCGCTACGCGACCAATCCGCAGCGCGTCGCCCACCGCGTGCAGTTGGTGCCGCTGCTGGCGCAGG
CTTTCCGCCACCACGGCCGCGACTACTGGCTGTCGGCGCTGGACAAGGCCGGCGTGCCCTGCGGGCCGATCAACAATGTG
GCCGAGGCATTCGCCGATCCGCAGGCGCAGGCGCGGCAGATGCAGCTGGACATGCGGGACGACGCCGGGCGGCAAGTGCC
GCTGGTAGGGTGTCCGATCAAACTTTCCGGCACGCCGGTCGAGTACAATCTAGCCCCTCCCGAGCTGGGAGAACATACTG
AGCAGATCTTGCGCGCGTTGGGTTACGTGGATTCGGACATTGTCGCATTGCGCAACAATGGCACCGTTTAA

Upstream 100 bases:

>100_bases
CCGGAATATCAGCGATTGCTACACTGGAAGCGCTCGTATTGCGGGATGTGTCGCGAACGGGCGGCATCATCGACAATCCG
GAGCGAAGGAGGAAGGCGCG

Downstream 100 bases:

>100_bases
ACGCTTGTTTGATTTTGACGACGTGACATCTTCATAGCATGATGTCCGGAAAATCAAACCCGTCCCAGCGGGCGCAAAGG
AGAAACGGTGCAACGCGAAT

Product: L-carnitine dehydrogenase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MAGALSGIKVVDLSRVLAGPWASQLLADLGAEVIKIEKPGSGDDTRQWAPPSLPDGRAAYFLCTNRGKRSLTVDIAQPAG
QEIVRKLVADADVVLENYKVGGLRKYGLDYDSLKAVNPRLVYCSITGFGQTGPYASLAGYDYIVQGMSGLMSITGPADGE
PHKVGVAVSDLFTGLYAANAVQAALIARERTGAGQHIDMALFDCSLAMLANVASNWLVGHNVPPRLGNAHANIVPYQVFA
ASDGHFILACGNDKQFAEVCRLVGQAQWARDPRYATNPQRVAHRVQLVPLLAQAFRHHGRDYWLSALDKAGVPCGPINNV
AEAFADPQAQARQMQLDMRDDAGRQVPLVGCPIKLSGTPVEYNLAPPELGEHTEQILRALGYVDSDIVALRNNGTV

Sequences:

>Translated_396_residues
MAGALSGIKVVDLSRVLAGPWASQLLADLGAEVIKIEKPGSGDDTRQWAPPSLPDGRAAYFLCTNRGKRSLTVDIAQPAG
QEIVRKLVADADVVLENYKVGGLRKYGLDYDSLKAVNPRLVYCSITGFGQTGPYASLAGYDYIVQGMSGLMSITGPADGE
PHKVGVAVSDLFTGLYAANAVQAALIARERTGAGQHIDMALFDCSLAMLANVASNWLVGHNVPPRLGNAHANIVPYQVFA
ASDGHFILACGNDKQFAEVCRLVGQAQWARDPRYATNPQRVAHRVQLVPLLAQAFRHHGRDYWLSALDKAGVPCGPINNV
AEAFADPQAQARQMQLDMRDDAGRQVPLVGCPIKLSGTPVEYNLAPPELGEHTEQILRALGYVDSDIVALRNNGTV
>Mature_395_residues
AGALSGIKVVDLSRVLAGPWASQLLADLGAEVIKIEKPGSGDDTRQWAPPSLPDGRAAYFLCTNRGKRSLTVDIAQPAGQ
EIVRKLVADADVVLENYKVGGLRKYGLDYDSLKAVNPRLVYCSITGFGQTGPYASLAGYDYIVQGMSGLMSITGPADGEP
HKVGVAVSDLFTGLYAANAVQAALIARERTGAGQHIDMALFDCSLAMLANVASNWLVGHNVPPRLGNAHANIVPYQVFAA
SDGHFILACGNDKQFAEVCRLVGQAQWARDPRYATNPQRVAHRVQLVPLLAQAFRHHGRDYWLSALDKAGVPCGPINNVA
EAFADPQAQARQMQLDMRDDAGRQVPLVGCPIKLSGTPVEYNLAPPELGEHTEQILRALGYVDSDIVALRNNGTV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=42.4936386768448, Blast_Score=338, Evalue=4e-93,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=40.0954653937947, Blast_Score=327, Evalue=1e-89,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=36.9928400954654, Blast_Score=283, Evalue=3e-76,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=36.8956743002545, Blast_Score=276, Evalue=2e-74,
Organism=Homo sapiens, GI266456254, Length=397, Percent_Identity=27.7078085642317, Blast_Score=145, Evalue=8e-35,
Organism=Homo sapiens, GI42794625, Length=397, Percent_Identity=27.7078085642317, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266458393, Length=258, Percent_Identity=32.5581395348837, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI266458397, Length=258, Percent_Identity=32.5581395348837, Blast_Score=131, Evalue=9e-31,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=38.3561643835616, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=38.3561643835616, Blast_Score=105, Evalue=6e-23,
Organism=Escherichia coli, GI87082093, Length=375, Percent_Identity=36.8, Blast_Score=272, Evalue=3e-74,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=29.6650717703349, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1786222, Length=409, Percent_Identity=27.3838630806846, Blast_Score=125, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=27.6470588235294, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=330, Percent_Identity=25.7575757575758, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648431, Length=394, Percent_Identity=42.8934010152284, Blast_Score=334, Evalue=6e-92,
Organism=Drosophila melanogaster, GI24585488, Length=328, Percent_Identity=27.7439024390244, Blast_Score=105, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42404; Mature: 42273

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGALSGIKVVDLSRVLAGPWASQLLADLGAEVIKIEKPGSGDDTRQWAPPSLPDGRAAY
CCCCCCCCEEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
FLCTNRGKRSLTVDIAQPAGQEIVRKLVADADVVLENYKVGGLRKYGLDYDSLKAVNPRL
EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHCCCCEE
VYCSITGFGQTGPYASLAGYDYIVQGMSGLMSITGPADGEPHKVGVAVSDLFTGLYAANA
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEHHHHHHHHHHHHH
VQAALIARERTGAGQHIDMALFDCSLAMLANVASNWLVGHNVPPRLGNAHANIVPYQVFA
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEEEE
ASDGHFILACGNDKQFAEVCRLVGQAQWARDPRYATNPQRVAHRVQLVPLLAQAFRHHGR
ECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
DYWLSALDKAGVPCGPINNVAEAFADPQAQARQMQLDMRDDAGRQVPLVGCPIKLSGTPV
HHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEECCEEECCCCE
EYNLAPPELGEHTEQILRALGYVDSDIVALRNNGTV
EEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCC
>Mature Secondary Structure 
AGALSGIKVVDLSRVLAGPWASQLLADLGAEVIKIEKPGSGDDTRQWAPPSLPDGRAAY
CCCCCCCEEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
FLCTNRGKRSLTVDIAQPAGQEIVRKLVADADVVLENYKVGGLRKYGLDYDSLKAVNPRL
EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHCCCCEE
VYCSITGFGQTGPYASLAGYDYIVQGMSGLMSITGPADGEPHKVGVAVSDLFTGLYAANA
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEHHHHHHHHHHHHH
VQAALIARERTGAGQHIDMALFDCSLAMLANVASNWLVGHNVPPRLGNAHANIVPYQVFA
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEEEE
ASDGHFILACGNDKQFAEVCRLVGQAQWARDPRYATNPQRVAHRVQLVPLLAQAFRHHGR
ECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
DYWLSALDKAGVPCGPINNVAEAFADPQAQARQMQLDMRDDAGRQVPLVGCPIKLSGTPV
HHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEECCEEECCCCE
EYNLAPPELGEHTEQILRALGYVDSDIVALRNNGTV
EEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]