| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499359
Identifier: 34499359
GI number: 34499359
Start: 4215622
End: 4216818
Strand: Reverse
Name: 34499359
Synonym: CV_3904
Alternate gene names: NA
Gene position: 4216818-4215622 (Counterclockwise)
Preceding gene: 34499361
Following gene: 34499358
Centisome position: 88.75
GC content: 68.17
Gene sequence:
>1197_bases ATGAGCGAATTGCAGATTGGTGTATTGATATTGGGCGGCGGCGTGATCGCCCTGGTTGTCGGTTTCAACGTGTTCCAGGA ATGGCGTTTCCGCAAGCGGACGCAGCAGGCGTTCGCGCGCGCCCATGATGACGTATTGCTGGACGTTCCCAAGAACAATG TCCGCGACGGCGTGCGAGCCGACAGGATGGAGCCGGTGCTGGTGGACGCGGAGCTGGAGCCGGAGGATGACGCGCTGGCG TTCGAGCCGCAGTTTCCCGAACAGGCGCCCGTCGCCCGCGAGCCGGCCGCGCATCCTGCCAGACAGGAGCCGGCCGCGCC GCAGTTCGACGTGCCGGTGATAGACGAGGAGGACGAGGCCGAGCTGGCGATGGACTCCGCCGACCACCAGGCGCTGGTGG TCGCGATGCTGGATCCGTCGCTGGACTTCATCGCCGAGGTGGTGTTCCACGAGCCGCACGAGCTGGCCGCGATGCCGCGC TTCAACGTCGGCAAGCGCACCCAACTGATCGGCCGCACCGAACGCGGCCTGTGGAAGGTGGCCGAGGCGCTGCCGGGCAC CCGCTACAAGCAGATCAACGTCAGCATGCAGATGGTGGACCGCTCCGGCGCGGTGACCGAGCAGGAGCTCGCCGCCTTCT GCCAGCAGGTGTCGCGCTTCGCCGAGGACCATGACGCCGCCGTCAGCTTCCCGCAGCGCCAGCAGAAGCTGGTGGCCGCG CGCGAGCTGGACCGCTTCTGCGCCGACGTCGACGTGCTGATCGGCATCAACATCGTGCCCCGATCGGCCATCGAGGGCGC GCGCCTGCGCAGCTTCGCCGAGGCGGCCGGACTGCAGCTGGAGCCGGACGGCGCCTTCCACTACCTGGCCGATTCCGGCA ATACTCTCTATTCGCTGGTGGCTGCCGACCAGATGCCGTTCACTTTCCACACGCTGCTGGACAAGTCCTTCCCGGCGCTG ACGCTGTTGTTCGACGTGCCACGCGTCGCCGGCGGCGTCGACGTGTTCGACCGCGCCGTGCATTTCGCGCGCCAGCTGGC GCAGGAGTTCGACGCCCAGCTGGTGGACGACAACCGCCGCGTGCTGAGCGAGACGGGGCTGGCCCGCATCCGCGACCAGC TGCTGCACATCTATGGCAGCATGGACGACCGCGGCATCGCGCCGGGCAGCGTGGCGGCCCTGCGCCTGTTCGCCTGA
Upstream 100 bases:
>100_bases GGGCGATCGGCGCGGGGCGCGGCGTCAGGGCGCTTGTTTACCGGCTCTTGATGGTTTTGGACAGGCGGCTTCGATTATTC GCCTTAATGCGGACTGGCTA
Downstream 100 bases:
>100_bases ACGATGATTTGACGATACCCGGGGCCGGCTTTGCCGGCCCTTTTGCCGTTCGAGAGTTTCCGATGACCGCAAATGAATTG CGCGCAGCCGAGCTGCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MSELQIGVLILGGGVIALVVGFNVFQEWRFRKRTQQAFARAHDDVLLDVPKNNVRDGVRADRMEPVLVDAELEPEDDALA FEPQFPEQAPVAREPAAHPARQEPAAPQFDVPVIDEEDEAELAMDSADHQALVVAMLDPSLDFIAEVVFHEPHELAAMPR FNVGKRTQLIGRTERGLWKVAEALPGTRYKQINVSMQMVDRSGAVTEQELAAFCQQVSRFAEDHDAAVSFPQRQQKLVAA RELDRFCADVDVLIGINIVPRSAIEGARLRSFAEAAGLQLEPDGAFHYLADSGNTLYSLVAADQMPFTFHTLLDKSFPAL TLLFDVPRVAGGVDVFDRAVHFARQLAQEFDAQLVDDNRRVLSETGLARIRDQLLHIYGSMDDRGIAPGSVAALRLFA
Sequences:
>Translated_398_residues MSELQIGVLILGGGVIALVVGFNVFQEWRFRKRTQQAFARAHDDVLLDVPKNNVRDGVRADRMEPVLVDAELEPEDDALA FEPQFPEQAPVAREPAAHPARQEPAAPQFDVPVIDEEDEAELAMDSADHQALVVAMLDPSLDFIAEVVFHEPHELAAMPR FNVGKRTQLIGRTERGLWKVAEALPGTRYKQINVSMQMVDRSGAVTEQELAAFCQQVSRFAEDHDAAVSFPQRQQKLVAA RELDRFCADVDVLIGINIVPRSAIEGARLRSFAEAAGLQLEPDGAFHYLADSGNTLYSLVAADQMPFTFHTLLDKSFPAL TLLFDVPRVAGGVDVFDRAVHFARQLAQEFDAQLVDDNRRVLSETGLARIRDQLLHIYGSMDDRGIAPGSVAALRLFA >Mature_397_residues SELQIGVLILGGGVIALVVGFNVFQEWRFRKRTQQAFARAHDDVLLDVPKNNVRDGVRADRMEPVLVDAELEPEDDALAF EPQFPEQAPVAREPAAHPARQEPAAPQFDVPVIDEEDEAELAMDSADHQALVVAMLDPSLDFIAEVVFHEPHELAAMPRF NVGKRTQLIGRTERGLWKVAEALPGTRYKQINVSMQMVDRSGAVTEQELAAFCQQVSRFAEDHDAAVSFPQRQQKLVAAR ELDRFCADVDVLIGINIVPRSAIEGARLRSFAEAAGLQLEPDGAFHYLADSGNTLYSLVAADQMPFTFHTLLDKSFPALT LLFDVPRVAGGVDVFDRAVHFARQLAQEFDAQLVDDNRRVLSETGLARIRDQLLHIYGSMDDRGIAPGSVAALRLFA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44014; Mature: 43883
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELQIGVLILGGGVIALVVGFNVFQEWRFRKRTQQAFARAHDDVLLDVPKNNVRDGVRA CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHCCCHH DRMEPVLVDAELEPEDDALAFEPQFPEQAPVAREPAAHPARQEPAAPQFDVPVIDEEDEA CCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH ELAMDSADHQALVVAMLDPSLDFIAEVVFHEPHELAAMPRFNVGKRTQLIGRTERGLWKV HHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHCCHHHHHHHH AEALPGTRYKQINVSMQMVDRSGAVTEQELAAFCQQVSRFAEDHDAAVSFPQRQQKLVAA HHHCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHH RELDRFCADVDVLIGINIVPRSAIEGARLRSFAEAAGLQLEPDGAFHYLADSGNTLYSLV HHHHHHHCCCEEEEEEEECCCHHHCHHHHHHHHHHCCCEECCCCCEEEEECCCCEEEEEE AADQMPFTFHTLLDKSFPALTLLFDVPRVAGGVDVFDRAVHFARQLAQEFDAQLVDDNRR ECCCCCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHCCCHH VLSETGLARIRDQLLHIYGSMDDRGIAPGSVAALRLFA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEECC >Mature Secondary Structure SELQIGVLILGGGVIALVVGFNVFQEWRFRKRTQQAFARAHDDVLLDVPKNNVRDGVRA CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHCCCHH DRMEPVLVDAELEPEDDALAFEPQFPEQAPVAREPAAHPARQEPAAPQFDVPVIDEEDEA CCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH ELAMDSADHQALVVAMLDPSLDFIAEVVFHEPHELAAMPRFNVGKRTQLIGRTERGLWKV HHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHCCHHHHHHHH AEALPGTRYKQINVSMQMVDRSGAVTEQELAAFCQQVSRFAEDHDAAVSFPQRQQKLVAA HHHCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHH RELDRFCADVDVLIGINIVPRSAIEGARLRSFAEAAGLQLEPDGAFHYLADSGNTLYSLV HHHHHHHCCCEEEEEEEECCCHHHCHHHHHHHHHHCCCEECCCCCEEEEECCCCEEEEEE AADQMPFTFHTLLDKSFPALTLLFDVPRVAGGVDVFDRAVHFARQLAQEFDAQLVDDNRR ECCCCCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHCCCHH VLSETGLARIRDQLLHIYGSMDDRGIAPGSVAALRLFA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA