| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499307
Identifier: 34499307
GI number: 34499307
Start: 4157257
End: 4158309
Strand: Direct
Name: 34499307
Synonym: CV_3852
Alternate gene names: NA
Gene position: 4157257-4158309 (Clockwise)
Preceding gene: 34499306
Following gene: 34499308
Centisome position: 87.5
GC content: 41.79
Gene sequence:
>1053_bases ATGACTATTCACGAGTCAGTCCTTGCAACACTTAATAAATGGAACATAGACCTAAGTGATTTCGCAAATATAGAACCAGG CAAATGGAACGGGCAAGAATATTGCAAAACAACAAAATCAATCAAAGAAAGAATAAAAGCAGAGAAAATAAACAACATAG GCCTATATGCAATACTATTCTCAGCAGAGATATTTGAGAACACGGCAAAGATCACTAATAAGGATGATGAGCTCATAAGC CTAAAGCAATGGCTTGATCGTTCACTCTCATTCTCTCTGAAGCACTTTTTATTTCTTCCGGAAAATGCTGCCAATGTGGA AAAATGGCAACCCATTAATGGAAAACCATCAGATCTAGCTCTAGTATCAGAAGAAATAGCAGAGCAGTTTTCGCTTGATT TACATTGCTCCTCTGATGATGCTGCTCTAGGCATACCATTTTTCACCAAAAATGATAATAATGACTTTTTGCCTTTACTA CCCAACTCAAAGCTTCATAAAGCAATAACATCACTACATTACCTTGGCAGTGACCTTACCCTTAATCACATTCCAAATTG GATCGAAAAGGCTTATTTTCGACCATATGACCGCAGCCTCTTTCTGGACATGATGGGAAACAATCCAGAAGATGAATCTC GGCTAGAGCTTTATTTCTCATGCCTAAAGCATAAGCATGGAGAAAAGGCTGGCACATTGACCTCGCCGGAGAGAATTACT AGTACGCTATCCGACGAGCTATCGGTAGCGCGTAGAGAATCGGAAAAATATCGCCAAGAAATAGAAGAGTTAAGGTCGGA AATCAACAATACAACTTGTACGCCCCTGCCACCACTTGTTCAAATAGCCATGGACATTTTCCGTATCCATTGGCACAGCC AGCTTACTCCTCAAGATGATGTCCGGTCTCGAGCCAATCAAGAGGCGATAGTTAAAAACCTGAAGGAAAAGTACCCCGGC ATGACGGACGCTATCGCGAAAGCCATCGACAAGGTAGCCTCCCCAATTGATAGAGACCCTAGAAATGCAAGCGGAAAGTA CCGCTTGCGCTAA
Upstream 100 bases:
>100_bases ACCAGCTTTGCCACGCCTAGATCGGCCAATCGAAAAGCGGGAAACCCTGCCCGCCTGGCGCGGCAACCCATTCTCAGGGT TGCGCAAAGGGAGCGCATGA
Downstream 100 bases:
>100_bases TTTGATAGACGGCGCCAACCCTCAGGGAAAACTCTCTTATGGCTACAAGGTTTCTACATAACCCTGAGGGTAGATATTTC CCTACCCCTCAGCCCTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MTIHESVLATLNKWNIDLSDFANIEPGKWNGQEYCKTTKSIKERIKAEKINNIGLYAILFSAEIFENTAKITNKDDELIS LKQWLDRSLSFSLKHFLFLPENAANVEKWQPINGKPSDLALVSEEIAEQFSLDLHCSSDDAALGIPFFTKNDNNDFLPLL PNSKLHKAITSLHYLGSDLTLNHIPNWIEKAYFRPYDRSLFLDMMGNNPEDESRLELYFSCLKHKHGEKAGTLTSPERIT STLSDELSVARRESEKYRQEIEELRSEINNTTCTPLPPLVQIAMDIFRIHWHSQLTPQDDVRSRANQEAIVKNLKEKYPG MTDAIAKAIDKVASPIDRDPRNASGKYRLR
Sequences:
>Translated_350_residues MTIHESVLATLNKWNIDLSDFANIEPGKWNGQEYCKTTKSIKERIKAEKINNIGLYAILFSAEIFENTAKITNKDDELIS LKQWLDRSLSFSLKHFLFLPENAANVEKWQPINGKPSDLALVSEEIAEQFSLDLHCSSDDAALGIPFFTKNDNNDFLPLL PNSKLHKAITSLHYLGSDLTLNHIPNWIEKAYFRPYDRSLFLDMMGNNPEDESRLELYFSCLKHKHGEKAGTLTSPERIT STLSDELSVARRESEKYRQEIEELRSEINNTTCTPLPPLVQIAMDIFRIHWHSQLTPQDDVRSRANQEAIVKNLKEKYPG MTDAIAKAIDKVASPIDRDPRNASGKYRLR >Mature_349_residues TIHESVLATLNKWNIDLSDFANIEPGKWNGQEYCKTTKSIKERIKAEKINNIGLYAILFSAEIFENTAKITNKDDELISL KQWLDRSLSFSLKHFLFLPENAANVEKWQPINGKPSDLALVSEEIAEQFSLDLHCSSDDAALGIPFFTKNDNNDFLPLLP NSKLHKAITSLHYLGSDLTLNHIPNWIEKAYFRPYDRSLFLDMMGNNPEDESRLELYFSCLKHKHGEKAGTLTSPERITS TLSDELSVARRESEKYRQEIEELRSEINNTTCTPLPPLVQIAMDIFRIHWHSQLTPQDDVRSRANQEAIVKNLKEKYPGM TDAIAKAIDKVASPIDRDPRNASGKYRLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40063; Mature: 39932
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIHESVLATLNKWNIDLSDFANIEPGKWNGQEYCKTTKSIKERIKAEKINNIGLYAILF CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH SAEIFENTAKITNKDDELISLKQWLDRSLSFSLKHFLFLPENAANVEKWQPINGKPSDLA HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHH LVSEEIAEQFSLDLHCSSDDAALGIPFFTKNDNNDFLPLLPNSKLHKAITSLHYLGSDLT HHHHHHHHHHCCEEEECCCCCEEECCEEECCCCCCEEECCCCHHHHHHHHHHHHHCCCCC LNHIPNWIEKAYFRPYDRSLFLDMMGNNPEDESRLELYFSCLKHKHGEKAGTLTSPERIT HHHCHHHHHHHHCCCCCHHHHHHECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH STLSDELSVARRESEKYRQEIEELRSEINNTTCTPLPPLVQIAMDIFRIHWHSQLTPQDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH VRSRANQEAIVKNLKEKYPGMTDAIAKAIDKVASPIDRDPRNASGKYRLR HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TIHESVLATLNKWNIDLSDFANIEPGKWNGQEYCKTTKSIKERIKAEKINNIGLYAILF CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH SAEIFENTAKITNKDDELISLKQWLDRSLSFSLKHFLFLPENAANVEKWQPINGKPSDLA HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHH LVSEEIAEQFSLDLHCSSDDAALGIPFFTKNDNNDFLPLLPNSKLHKAITSLHYLGSDLT HHHHHHHHHHCCEEEECCCCCEEECCEEECCCCCCEEECCCCHHHHHHHHHHHHHCCCCC LNHIPNWIEKAYFRPYDRSLFLDMMGNNPEDESRLELYFSCLKHKHGEKAGTLTSPERIT HHHCHHHHHHHHCCCCCHHHHHHECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH STLSDELSVARRESEKYRQEIEELRSEINNTTCTPLPPLVQIAMDIFRIHWHSQLTPQDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH VRSRANQEAIVKNLKEKYPGMTDAIAKAIDKVASPIDRDPRNASGKYRLR HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA