| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499290
Identifier: 34499290
GI number: 34499290
Start: 4133655
End: 4135823
Strand: Direct
Name: 34499290
Synonym: CV_3835
Alternate gene names: NA
Gene position: 4133655-4135823 (Clockwise)
Preceding gene: 34499289
Following gene: 34499291
Centisome position: 87.0
GC content: 62.56
Gene sequence:
>2169_bases ATGATCATGCAATCTATGTACGACCAGTCCTCGAATCCCCCGACAACCCCCGACGAACCGACCGCCGCTCCCCCGCAGGC GGTCACCACGCGCCAGTTGCTGAATCTGAACGAGCGCGGCCAGCACGGGTTGTACCAATACTTCATCGAACACGACACCA ACCGCATCCTGCAGCACCTGGACACGCTGCGCGGCATGGCCTTTTCCCGCGACGCGGAAGACGGCCAAAGCGGTCCGACC GAGAAGCCTTTCCCCTCGGTCTGCCTGATCGGCCTGGGGCGCTGCGGTTCCAATATCGCGCTCGACGTGGCGACGCTGGT CTACAACGCGCGCAAGTTCTACCTGAACGAGTTCAACCAGGACGACAAGAGCGCGCCGGAGCAGGAGCAGCGCCGGCCGC GCAGATGGCTGCACCGCAACCTGCTGGCCCAGCACAAGGCGGCCAAGCCGGCCTTCCTGATCGAACCGATGGTGATGCTG GGCGACCTGGACAAGGACATCAAGGGCCGCATCCGCTTCTCCCGCCGCGGCGAGCAGGGCGACTTCATCAACAACTACAA CAAGCTGAAGATCATGGACCTGGCCGAGGTCCACGCCGGCGGCGCCGGCAACGCGCCCATTCTGGGCCAGTACCTGGCCA AGATCATTCTCAACAAGGACACGCTGAGCTTCTCCGACCCGGACTGGACGCTGATCCACTCCTACCTGGTGGACTCCTGC GGCATCAAGGCCAACCAGTCGCGGCTGTATTTCTACATCTTCAGCGCCGGCGGCGGCACCGGCTCCGGCATGGCGTCCGA ATTCGGCCTGGCCCAGCAGTACGCCTACATGAGCAAGACCTTCGAGACCCGCAACGAAGGCAAGGCCGACCAGGGCGACG ACTACGGCTTCGTGTTCGAACCCATCTTCACCAGCGGCATCTGCATCCTGCCCAACATCTCCGGCCAGCACGCCGAAGGC TCTGAAGCGCTGCACATCAACGCCGGCCGGCTGCTGTGCAAATACCTGTCGGAAGAGTGGGACTTCTCCTACAACTTCGA CAACGAGGAAGCCGGCGCCGAAAGCGTGATGCGCCGCATCCGGCCGTGGAACGCGATGATGCTGATCTCCAACGACATCA TGCGCTACGCCGAGGAGAGCGAAGGCGGCAACATCGAGCACCTCGACGTCAACGCGATGGAGCGCCACGCCAACCAGTAC ATCTCGCAGCAGATCTTCAACATCCTGACCGCGCAGGCTGTCACCAGCGACTACGACGAGAACTACTTCCTGCGCGCCGG CATCGACATGGGCGAGACGATACGGCTGGACGCCAACGACCTGTTCATGAGCCTGGCCGGCCCGGTGGCCGTCGCCTACG CCGAATCGGTGGTGTCAGACCCGCTGGGCTCGGACGGCTTCGTCAACAAGCTGGACATCGACGATCTGTTCTACCGCTCG ATCGACCTCCCGCACTTCAACCAGCAGACCCAGGCGATAGAAGGCATCAGCCTGCTGCCGATCGAATCGGCCAGCTACCG CGCGGCGCTGGCCGACTACAAGCAGTCCGGCTACGCGGCGGAAAAGCTGAACCAGCTGTTCTTCTTCCAGAATTGCTCGT CGGTGGTGGCCATCCTGTCGCTGCCCAAGGGCTACAAGCTGTCCTACCTGGACCTGAACCGGCTGAAGCGCCACCTGAAC GACCTGTTCCCCAGCACCACGCTGAAGCGCTACGCGCTGGTGATCGGCGCGTCCACCAATCTGTCGCTGACCACGCTGGT GGCCAAGAGCCCCTGCCTGAGCGACGACTTCCTGACGCTGATCGTCGCCTACATCAAGCGCTGCTTCGCCCACGGCAACC ACCGCTTCGACGACAGCCTGGACAACGTGATACTGGACCTGATCACCGCTGACACCTTCGACGAAACGGTGCTGGAACGC CTGCTCAACGAGTACGAAAACCCGGCCAAGATCCTGGACACCAACTGGTTCGCGATCAAGCCGATGTACGAGAAGAAATA CCGCGAGCTGATCCGCGACAGCAAGCGCTTCGTGTCGATCAACGACATCCGGCTGACCCGCGAGCACGTGCAGAAAGCGG TGTGCTACCTGCGCGAGATCTACCGCCACCGCATCGGCAAGACCCGGGTGGTCTCGCTCAACAGCTACTCGCGCAAACAC CACGCCTAA
Upstream 100 bases:
>100_bases ATGTGAATAACACCAAAACACCATAAGCATCGCTGCTGAAAGGAAAGGCCGGCCACGCCGGCCCGACCGCCCCCCAAGGG TAACCTTGAAGAGAGAATGG
Downstream 100 bases:
>100_bases CCCATCCGGCAGCGCCTTCCAACCCCGCCCCGCCCCCGCGCGCGGCGGGGTTTCTGCTGCCCGCGCCCCGCGGCGGATTA TTTTTGTCGCCACCAGACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 722; Mature: 722
Protein sequence:
>722_residues MIMQSMYDQSSNPPTTPDEPTAAPPQAVTTRQLLNLNERGQHGLYQYFIEHDTNRILQHLDTLRGMAFSRDAEDGQSGPT EKPFPSVCLIGLGRCGSNIALDVATLVYNARKFYLNEFNQDDKSAPEQEQRRPRRWLHRNLLAQHKAAKPAFLIEPMVML GDLDKDIKGRIRFSRRGEQGDFINNYNKLKIMDLAEVHAGGAGNAPILGQYLAKIILNKDTLSFSDPDWTLIHSYLVDSC GIKANQSRLYFYIFSAGGGTGSGMASEFGLAQQYAYMSKTFETRNEGKADQGDDYGFVFEPIFTSGICILPNISGQHAEG SEALHINAGRLLCKYLSEEWDFSYNFDNEEAGAESVMRRIRPWNAMMLISNDIMRYAEESEGGNIEHLDVNAMERHANQY ISQQIFNILTAQAVTSDYDENYFLRAGIDMGETIRLDANDLFMSLAGPVAVAYAESVVSDPLGSDGFVNKLDIDDLFYRS IDLPHFNQQTQAIEGISLLPIESASYRAALADYKQSGYAAEKLNQLFFFQNCSSVVAILSLPKGYKLSYLDLNRLKRHLN DLFPSTTLKRYALVIGASTNLSLTTLVAKSPCLSDDFLTLIVAYIKRCFAHGNHRFDDSLDNVILDLITADTFDETVLER LLNEYENPAKILDTNWFAIKPMYEKKYRELIRDSKRFVSINDIRLTREHVQKAVCYLREIYRHRIGKTRVVSLNSYSRKH HA
Sequences:
>Translated_722_residues MIMQSMYDQSSNPPTTPDEPTAAPPQAVTTRQLLNLNERGQHGLYQYFIEHDTNRILQHLDTLRGMAFSRDAEDGQSGPT EKPFPSVCLIGLGRCGSNIALDVATLVYNARKFYLNEFNQDDKSAPEQEQRRPRRWLHRNLLAQHKAAKPAFLIEPMVML GDLDKDIKGRIRFSRRGEQGDFINNYNKLKIMDLAEVHAGGAGNAPILGQYLAKIILNKDTLSFSDPDWTLIHSYLVDSC GIKANQSRLYFYIFSAGGGTGSGMASEFGLAQQYAYMSKTFETRNEGKADQGDDYGFVFEPIFTSGICILPNISGQHAEG SEALHINAGRLLCKYLSEEWDFSYNFDNEEAGAESVMRRIRPWNAMMLISNDIMRYAEESEGGNIEHLDVNAMERHANQY ISQQIFNILTAQAVTSDYDENYFLRAGIDMGETIRLDANDLFMSLAGPVAVAYAESVVSDPLGSDGFVNKLDIDDLFYRS IDLPHFNQQTQAIEGISLLPIESASYRAALADYKQSGYAAEKLNQLFFFQNCSSVVAILSLPKGYKLSYLDLNRLKRHLN DLFPSTTLKRYALVIGASTNLSLTTLVAKSPCLSDDFLTLIVAYIKRCFAHGNHRFDDSLDNVILDLITADTFDETVLER LLNEYENPAKILDTNWFAIKPMYEKKYRELIRDSKRFVSINDIRLTREHVQKAVCYLREIYRHRIGKTRVVSLNSYSRKH HA >Mature_722_residues MIMQSMYDQSSNPPTTPDEPTAAPPQAVTTRQLLNLNERGQHGLYQYFIEHDTNRILQHLDTLRGMAFSRDAEDGQSGPT EKPFPSVCLIGLGRCGSNIALDVATLVYNARKFYLNEFNQDDKSAPEQEQRRPRRWLHRNLLAQHKAAKPAFLIEPMVML GDLDKDIKGRIRFSRRGEQGDFINNYNKLKIMDLAEVHAGGAGNAPILGQYLAKIILNKDTLSFSDPDWTLIHSYLVDSC GIKANQSRLYFYIFSAGGGTGSGMASEFGLAQQYAYMSKTFETRNEGKADQGDDYGFVFEPIFTSGICILPNISGQHAEG SEALHINAGRLLCKYLSEEWDFSYNFDNEEAGAESVMRRIRPWNAMMLISNDIMRYAEESEGGNIEHLDVNAMERHANQY ISQQIFNILTAQAVTSDYDENYFLRAGIDMGETIRLDANDLFMSLAGPVAVAYAESVVSDPLGSDGFVNKLDIDDLFYRS IDLPHFNQQTQAIEGISLLPIESASYRAALADYKQSGYAAEKLNQLFFFQNCSSVVAILSLPKGYKLSYLDLNRLKRHLN DLFPSTTLKRYALVIGASTNLSLTTLVAKSPCLSDDFLTLIVAYIKRCFAHGNHRFDDSLDNVILDLITADTFDETVLER LLNEYENPAKILDTNWFAIKPMYEKKYRELIRDSKRFVSINDIRLTREHVQKAVCYLREIYRHRIGKTRVVSLNSYSRKH HA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81720; Mature: 81720
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS00227 TUBULIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMQSMYDQSSNPPTTPDEPTAAPPQAVTTRQLLNLNERGQHGLYQYFIEHDTNRILQHL CCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH DTLRGMAFSRDAEDGQSGPTEKPFPSVCLIGLGRCGSNIALDVATLVYNARKFYLNEFNQ HHHHCCHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC DDKSAPEQEQRRPRRWLHRNLLAQHKAAKPAFLIEPMVMLGDLDKDIKGRIRFSRRGEQG CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHCCCCCCHHCCEEEECCCCCC DFINNYNKLKIMDLAEVHAGGAGNAPILGQYLAKIILNKDTLSFSDPDWTLIHSYLVDSC CCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC GIKANQSRLYFYIFSAGGGTGSGMASEFGLAQQYAYMSKTFETRNEGKADQGDDYGFVFE CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE PIFTSGICILPNISGQHAEGSEALHINAGRLLCKYLSEEWDFSYNFDNEEAGAESVMRRI HHHHCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHH RPWNAMMLISNDIMRYAEESEGGNIEHLDVNAMERHANQYISQQIFNILTAQAVTSDYDE CCCCEEEEHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NYFLRAGIDMGETIRLDANDLFMSLAGPVAVAYAESVVSDPLGSDGFVNKLDIDDLFYRS CEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHH IDLPHFNQQTQAIEGISLLPIESASYRAALADYKQSGYAAEKLNQLFFFQNCSSVVAILS CCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LPKGYKLSYLDLNRLKRHLNDLFPSTTLKRYALVIGASTNLSLTTLVAKSPCLSDDFLTL CCCCCEEEEECHHHHHHHHHHHCCCHHHHHEEEEEECCCCCEEEEEEECCCCCCHHHHHH IVAYIKRCFAHGNHRFDDSLDNVILDLITADTFDETVLERLLNEYENPAKILDTNWFAIK HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHEEECCCEEEC PMYEKKYRELIRDSKRFVSINDIRLTREHVQKAVCYLREIYRHRIGKTRVVSLNSYSRKH CHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC HA CC >Mature Secondary Structure MIMQSMYDQSSNPPTTPDEPTAAPPQAVTTRQLLNLNERGQHGLYQYFIEHDTNRILQHL CCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH DTLRGMAFSRDAEDGQSGPTEKPFPSVCLIGLGRCGSNIALDVATLVYNARKFYLNEFNQ HHHHCCHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC DDKSAPEQEQRRPRRWLHRNLLAQHKAAKPAFLIEPMVMLGDLDKDIKGRIRFSRRGEQG CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHCCCCCCHHCCEEEECCCCCC DFINNYNKLKIMDLAEVHAGGAGNAPILGQYLAKIILNKDTLSFSDPDWTLIHSYLVDSC CCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC GIKANQSRLYFYIFSAGGGTGSGMASEFGLAQQYAYMSKTFETRNEGKADQGDDYGFVFE CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE PIFTSGICILPNISGQHAEGSEALHINAGRLLCKYLSEEWDFSYNFDNEEAGAESVMRRI HHHHCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHH RPWNAMMLISNDIMRYAEESEGGNIEHLDVNAMERHANQYISQQIFNILTAQAVTSDYDE CCCCEEEEHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NYFLRAGIDMGETIRLDANDLFMSLAGPVAVAYAESVVSDPLGSDGFVNKLDIDDLFYRS CEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHH IDLPHFNQQTQAIEGISLLPIESASYRAALADYKQSGYAAEKLNQLFFFQNCSSVVAILS CCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LPKGYKLSYLDLNRLKRHLNDLFPSTTLKRYALVIGASTNLSLTTLVAKSPCLSDDFLTL CCCCCEEEEECHHHHHHHHHHHCCCHHHHHEEEEEECCCCCEEEEEEECCCCCCHHHHHH IVAYIKRCFAHGNHRFDDSLDNVILDLITADTFDETVLERLLNEYENPAKILDTNWFAIK HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHEEECCCEEEC PMYEKKYRELIRDSKRFVSINDIRLTREHVQKAVCYLREIYRHRIGKTRVVSLNSYSRKH CHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC HA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA