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The map label for this gene is dedA [C]

Identifier: 34499247

GI number: 34499247

Start: 4087453

End: 4088070

Strand: Reverse

Name: dedA [C]

Synonym: CV_3792

Alternate gene names: 34499247

Gene position: 4088070-4087453 (Counterclockwise)

Preceding gene: 34499249

Following gene: 34499245

Centisome position: 86.05

GC content: 61.97

Gene sequence:

>618_bases
ATGGATACTCTGCAGATACTTCTCGATTTTTTCGCTGGCTACGGCTACGTGGCTGTGTTCGCGGTGTTGCTGGTTTGCGG
TTTCGGGGTGCCGATTCCCGAGGACATCACCCTGGTGGCCGGCGGCGTGATTTCTGGCCTGGGCTACGCCAATGTGCATT
ACATGTTCGTGGTCGGCATGGCCGGCGTGCTGGTCGGCGACGGCATCATGTTTCTGGCCGGGCGGATCTTCGGCCACAAG
GTGCTGCGCTTCAAGCCCATCGCCCGCATCCTGACCCAGGAACGCTTCGAGGCGGTGCAGGAGAAGTTCGAGAAATACGG
CAACTGGGTGCTGTTCGTCGCCCGTTTCCTGCCAGGCCTGCGTTCCCCGATCTTCATCACCGCCGGCATGACCCGGCGCG
TGTCCTATTGGCGCTTCCTGATCATGGATGGCTTCGCCGCGCTGATCTCGGTGCCGGTCTGGGTCTATCTTGGCTATTAT
GGCGCGGCGAACCGCGACTGGCTGATGACGATGGTGCACCGCGGCCAAGCGGGGATCCTGACCGTGGTGGCGGTGCTGCT
GCTGGTGGTCGGCTTCGTCTGGCTCAAACGCCGCCGCATGTCCTGCGCGAAGAAATAA

Upstream 100 bases:

>100_bases
TGTAGGAGAGGTGTGCTATTATACACCTCCGTGCATGGACATTAGCCGCCCAGCCGCTTGATCGCGACGATTTGGAATGA
GCCGGCGGACGGAATACTAG

Downstream 100 bases:

>100_bases
GCATCCGGCAATGCAAATGAAAAGGCCATCCTTGCGGATGGCCTTTTTGCCGTCAGGGCGGATCAGCCTACCTGCAGCAG
CTCCACTTCGAACACCAGCG

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MDTLQILLDFFAGYGYVAVFAVLLVCGFGVPIPEDITLVAGGVISGLGYANVHYMFVVGMAGVLVGDGIMFLAGRIFGHK
VLRFKPIARILTQERFEAVQEKFEKYGNWVLFVARFLPGLRSPIFITAGMTRRVSYWRFLIMDGFAALISVPVWVYLGYY
GAANRDWLMTMVHRGQAGILTVVAVLLLVVGFVWLKRRRMSCAKK

Sequences:

>Translated_205_residues
MDTLQILLDFFAGYGYVAVFAVLLVCGFGVPIPEDITLVAGGVISGLGYANVHYMFVVGMAGVLVGDGIMFLAGRIFGHK
VLRFKPIARILTQERFEAVQEKFEKYGNWVLFVARFLPGLRSPIFITAGMTRRVSYWRFLIMDGFAALISVPVWVYLGYY
GAANRDWLMTMVHRGQAGILTVVAVLLLVVGFVWLKRRRMSCAKK
>Mature_205_residues
MDTLQILLDFFAGYGYVAVFAVLLVCGFGVPIPEDITLVAGGVISGLGYANVHYMFVVGMAGVLVGDGIMFLAGRIFGHK
VLRFKPIARILTQERFEAVQEKFEKYGNWVLFVARFLPGLRSPIFITAGMTRRVSYWRFLIMDGFAALISVPVWVYLGYY
GAANRDWLMTMVHRGQAGILTVVAVLLLVVGFVWLKRRRMSCAKK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=180, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22914; Mature: 22914

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQILLDFFAGYGYVAVFAVLLVCGFGVPIPEDITLVAGGVISGLGYANVHYMFVVGM
CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
AGVLVGDGIMFLAGRIFGHKVLRFKPIARILTQERFEAVQEKFEKYGNWVLFVARFLPGL
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
RSPIFITAGMTRRVSYWRFLIMDGFAALISVPVWVYLGYYGAANRDWLMTMVHRGQAGIL
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
TVVAVLLLVVGFVWLKRRRMSCAKK
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTLQILLDFFAGYGYVAVFAVLLVCGFGVPIPEDITLVAGGVISGLGYANVHYMFVVGM
CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
AGVLVGDGIMFLAGRIFGHKVLRFKPIARILTQERFEAVQEKFEKYGNWVLFVARFLPGL
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
RSPIFITAGMTRRVSYWRFLIMDGFAALISVPVWVYLGYYGAANRDWLMTMVHRGQAGIL
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
TVVAVLLLVVGFVWLKRRRMSCAKK
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]