| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34499249
Identifier: 34499249
GI number: 34499249
Start: 4089755
End: 4091668
Strand: Reverse
Name: 34499249
Synonym: CV_3794
Alternate gene names: NA
Gene position: 4091668-4089755 (Counterclockwise)
Preceding gene: 34499250
Following gene: 34499247
Centisome position: 86.12
GC content: 67.82
Gene sequence:
>1914_bases ATGAGAACAATAGCCGCATTTCCCCTTTCCCGCGCCGCCGTCGCGGCTGCGCTGGCGCTCGCCGGCCTGCAGGCGCATGC CGCCTGCAGCTTGCCGGACGCGCGCATCCACCAGGTCCAGGGCAATGGCGCTCAAAGCCCGATGCAGGGCAAGACCGTCG CCGTGCAGGGCGTGGTCAGCAGCCTGCTGTACGGCAAGGACGGCCCGGTGGGCTTTTTCATCCAGGAAGCGCCGCAGAAC CAGGACGCCGACCCCGCCACTTCAGAGGGCATCTACGTCTATACCGGCAAGCTGGCGCTGCCGGCGCTGAAGGCCGGCGA CGTGGTCGGCGTGCGCGGAAAGGTGCTGGAATTCGGCCGCAAGGGCGACACGCGCACCGAAACCCAGCTGCAGCCGGCTG CCGCCGGCGATGTGCAGGCGTGCGGCTATCAGGGCGAGCTGGCGCCGGTGGCATTGCGCCTGCCGCTGAGCGGCGACGCG GCCCAGCTGGAGTCGCTGGCCGGCATGGCGGTCAAGTTCGAGCAGCCGCTGTATGTCATCGACAGCTACAACTACGGCCG CTACGGCGAGCTGACCTTGTCCAGCCAGCCGCGGCAATGGGTGCCTACCCAGCGCTATCGCCCCGGCAGCGCCGAGGCCC AGGCGCTGCGCGCCGCCAATCCGCGCGACCGCGTGCTGCTGGATGACGGAAAAACCTGGCAGAACGCCGACGCCTGGCTG CCCGCTCCCGGAGGCTTGTCGGCAGCCAATACGCTGCGGGTGGGGGATAGACTGGATGGCCTCGCCGGCGTGGTGTCGTT CAGCAACGGCGCTTATCGCGTGCAGCCGCTGTCCCCGCCGCAGGTATCGGCTGCCAATGCGCGCTCGGCGGCGCCGGCGC GAAAGGCGGGCCACCTGCGGGTGGCCAGCTTCAACGTGCTCAATTTTTTCAACGGCGACGGATTGGGGGGCGGCTTTCCG ACCGAGCGCGGCGCGAAGACCCGCGACGACTTCCTGCGGCAGAAGGCCAAGATCGTCAGCGCCATCCGCCAGCTGGACGC CGACGTGCTGGGTCTGATGGAACTGGAAAACGACGGATTCGGCCCGCAATCGGCGGTGAAGGAGCTGGTCGACGCGTTGA ATGCCGGCCAGGCGGCCGACAAGCAATATCGCTTCGTCGATCCCGGCTTGCCGAAGATCGGCACCGACGCCATCACCACC GGCATGCTCTACCGTCCGTCGCGGGTGAAGCCCGACGGCGCCGCGCAGGCGCTGACGGTGGGCGATCCGGGCAAGAACCG CCTCAGCCTGGCGCAAACTTTCGCCGCCGACGGCAAGAAGCTGACGCTGGTGGTCAACCATCTGAAGTCCAAGGGCAGCA GCTGCGATCAGGTCAAGGTGGATGGCGCGCCCGACGCGGATACCGGCGACGGCCAGGGCAATTGCAATCTGACCCGTGTG CAGGCCGCGCGCGATCTGGTGAAGTGGGCGAAGCAGCGCGGCGCGTCCGCCAAGGAAGGGCTGCTGGTGATGGGCGACAT GAACGCCTACGCCAAGGAGGACCCGATCCGCGCCTTCGAGGACGGCGGCTTGTCCAATCTGCTGGCGCGTTTCCAGAAGG ACGCCTACTCCTATGTTTACCAGGGCGAGTCCGGCAACCTCGACCATGCGCTGGCCGACGCTTCGCTGGTCAAATGGGTG GCCGACGCCGGTGAATGGCACATCAACGCCGATGAGCCGACCGCGCTCGAATACGGCAGCGAGTTCAAGTCCGCCGAGCA GCGGCAGAATTACTACGCGCCCGACGCCTACCGTTCGTCCGACCACGACCCCTTGTACGTGGATCTGCAGCTGGTCCCGA TCGCCGGCGCCGACGAGGTCGCCCTGGGCATGCTCGGTCTCGCCGGTTTCCTGGCTTGGCGCCGACGCAGGTGA
Upstream 100 bases:
>100_bases GCATTTTTTTCATCCAAAATTTGTTTTCCGATAATAATAAACTTGAATGTCATCAATCTGTGGATAGAATTGCCGCACCT CTACTCAGGATGACAACAAG
Downstream 100 bases:
>100_bases GGCTGCCGCCGGCCAGCCTGTTGCCGGCGCTGCTGCCGCTGCTGGCGCCTTGGGGCGAGGCGGCGCGGCGCTGGCTCTTC AATCCGTCCATAGACGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Ribonuclease/Nuclease Fusion Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; LPXTG-Motif Cell Wall Anchor Domain Protein; Calcineurin-Like Phosphoesterase; Endonuclease I; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Extracellular Nuclease/Phosphatase; 5-Nucleotidase Family Protein; Secreted Protein
Number of amino acids: Translated: 637; Mature: 637
Protein sequence:
>637_residues MRTIAAFPLSRAAVAAALALAGLQAHAACSLPDARIHQVQGNGAQSPMQGKTVAVQGVVSSLLYGKDGPVGFFIQEAPQN QDADPATSEGIYVYTGKLALPALKAGDVVGVRGKVLEFGRKGDTRTETQLQPAAAGDVQACGYQGELAPVALRLPLSGDA AQLESLAGMAVKFEQPLYVIDSYNYGRYGELTLSSQPRQWVPTQRYRPGSAEAQALRAANPRDRVLLDDGKTWQNADAWL PAPGGLSAANTLRVGDRLDGLAGVVSFSNGAYRVQPLSPPQVSAANARSAAPARKAGHLRVASFNVLNFFNGDGLGGGFP TERGAKTRDDFLRQKAKIVSAIRQLDADVLGLMELENDGFGPQSAVKELVDALNAGQAADKQYRFVDPGLPKIGTDAITT GMLYRPSRVKPDGAAQALTVGDPGKNRLSLAQTFAADGKKLTLVVNHLKSKGSSCDQVKVDGAPDADTGDGQGNCNLTRV QAARDLVKWAKQRGASAKEGLLVMGDMNAYAKEDPIRAFEDGGLSNLLARFQKDAYSYVYQGESGNLDHALADASLVKWV ADAGEWHINADEPTALEYGSEFKSAEQRQNYYAPDAYRSSDHDPLYVDLQLVPIAGADEVALGMLGLAGFLAWRRRR
Sequences:
>Translated_637_residues MRTIAAFPLSRAAVAAALALAGLQAHAACSLPDARIHQVQGNGAQSPMQGKTVAVQGVVSSLLYGKDGPVGFFIQEAPQN QDADPATSEGIYVYTGKLALPALKAGDVVGVRGKVLEFGRKGDTRTETQLQPAAAGDVQACGYQGELAPVALRLPLSGDA AQLESLAGMAVKFEQPLYVIDSYNYGRYGELTLSSQPRQWVPTQRYRPGSAEAQALRAANPRDRVLLDDGKTWQNADAWL PAPGGLSAANTLRVGDRLDGLAGVVSFSNGAYRVQPLSPPQVSAANARSAAPARKAGHLRVASFNVLNFFNGDGLGGGFP TERGAKTRDDFLRQKAKIVSAIRQLDADVLGLMELENDGFGPQSAVKELVDALNAGQAADKQYRFVDPGLPKIGTDAITT GMLYRPSRVKPDGAAQALTVGDPGKNRLSLAQTFAADGKKLTLVVNHLKSKGSSCDQVKVDGAPDADTGDGQGNCNLTRV QAARDLVKWAKQRGASAKEGLLVMGDMNAYAKEDPIRAFEDGGLSNLLARFQKDAYSYVYQGESGNLDHALADASLVKWV ADAGEWHINADEPTALEYGSEFKSAEQRQNYYAPDAYRSSDHDPLYVDLQLVPIAGADEVALGMLGLAGFLAWRRRR >Mature_637_residues MRTIAAFPLSRAAVAAALALAGLQAHAACSLPDARIHQVQGNGAQSPMQGKTVAVQGVVSSLLYGKDGPVGFFIQEAPQN QDADPATSEGIYVYTGKLALPALKAGDVVGVRGKVLEFGRKGDTRTETQLQPAAAGDVQACGYQGELAPVALRLPLSGDA AQLESLAGMAVKFEQPLYVIDSYNYGRYGELTLSSQPRQWVPTQRYRPGSAEAQALRAANPRDRVLLDDGKTWQNADAWL PAPGGLSAANTLRVGDRLDGLAGVVSFSNGAYRVQPLSPPQVSAANARSAAPARKAGHLRVASFNVLNFFNGDGLGGGFP TERGAKTRDDFLRQKAKIVSAIRQLDADVLGLMELENDGFGPQSAVKELVDALNAGQAADKQYRFVDPGLPKIGTDAITT GMLYRPSRVKPDGAAQALTVGDPGKNRLSLAQTFAADGKKLTLVVNHLKSKGSSCDQVKVDGAPDADTGDGQGNCNLTRV QAARDLVKWAKQRGASAKEGLLVMGDMNAYAKEDPIRAFEDGGLSNLLARFQKDAYSYVYQGESGNLDHALADASLVKWV ADAGEWHINADEPTALEYGSEFKSAEQRQNYYAPDAYRSSDHDPLYVDLQLVPIAGADEVALGMLGLAGFLAWRRRR
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67695; Mature: 67695
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTIAAFPLSRAAVAAALALAGLQAHAACSLPDARIHQVQGNGAQSPMQGKTVAVQGVVS CCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCCEEEHHHHHH SLLYGKDGPVGFFIQEAPQNQDADPATSEGIYVYTGKLALPALKAGDVVGVRGKVLEFGR HHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCEECCCCCCCCEEECCHHHHHHCC KGDTRTETQLQPAAAGDVQACGYQGELAPVALRLPLSGDAAQLESLAGMAVKFEQPLYVI CCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCEEEECCCEEEE DSYNYGRYGELTLSSQPRQWVPTQRYRPGSAEAQALRAANPRDRVLLDDGKTWQNADAWL ECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCC PAPGGLSAANTLRVGDRLDGLAGVVSFSNGAYRVQPLSPPQVSAANARSAAPARKAGHLR CCCCCCCCCCEEECCCHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCHHCCCEE VASFNVLNFFNGDGLGGGFPTERGAKTRDDFLRQKAKIVSAIRQLDADVLGLMELENDGF EEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHEEEEECCCCC GPQSAVKELVDALNAGQAADKQYRFVDPGLPKIGTDAITTGMLYRPSRVKPDGAAQALTV CHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCEEECCCCCCCCCCCEEEEE GDPGKNRLSLAQTFAADGKKLTLVVNHLKSKGSSCDQVKVDGAPDADTGDGQGNCNLTRV CCCCCCHHHHHHHHHCCCCEEEEEEEHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEHH QAARDLVKWAKQRGASAKEGLLVMGDMNAYAKEDPIRAFEDGGLSNLLARFQKDAYSYVY HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHEEE QGESGNLDHALADASLVKWVADAGEWHINADEPTALEYGSEFKSAEQRQNYYAPDAYRSS ECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCC DHDPLYVDLQLVPIAGADEVALGMLGLAGFLAWRRRR CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRTIAAFPLSRAAVAAALALAGLQAHAACSLPDARIHQVQGNGAQSPMQGKTVAVQGVVS CCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCCEEEHHHHHH SLLYGKDGPVGFFIQEAPQNQDADPATSEGIYVYTGKLALPALKAGDVVGVRGKVLEFGR HHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCEECCCCCCCCEEECCHHHHHHCC KGDTRTETQLQPAAAGDVQACGYQGELAPVALRLPLSGDAAQLESLAGMAVKFEQPLYVI CCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCEEEECCCEEEE DSYNYGRYGELTLSSQPRQWVPTQRYRPGSAEAQALRAANPRDRVLLDDGKTWQNADAWL ECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCC PAPGGLSAANTLRVGDRLDGLAGVVSFSNGAYRVQPLSPPQVSAANARSAAPARKAGHLR CCCCCCCCCCEEECCCHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCHHCCCEE VASFNVLNFFNGDGLGGGFPTERGAKTRDDFLRQKAKIVSAIRQLDADVLGLMELENDGF EEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHEEEEECCCCC GPQSAVKELVDALNAGQAADKQYRFVDPGLPKIGTDAITTGMLYRPSRVKPDGAAQALTV CHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCEEECCCCCCCCCCCEEEEE GDPGKNRLSLAQTFAADGKKLTLVVNHLKSKGSSCDQVKVDGAPDADTGDGQGNCNLTRV CCCCCCHHHHHHHHHCCCCEEEEEEEHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEHH QAARDLVKWAKQRGASAKEGLLVMGDMNAYAKEDPIRAFEDGGLSNLLARFQKDAYSYVY HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHEEE QGESGNLDHALADASLVKWVADAGEWHINADEPTALEYGSEFKSAEQRQNYYAPDAYRSS ECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCC DHDPLYVDLQLVPIAGADEVALGMLGLAGFLAWRRRR CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA