| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499240
Identifier: 34499240
GI number: 34499240
Start: 4082193
End: 4083110
Strand: Direct
Name: 34499240
Synonym: CV_3785
Alternate gene names: NA
Gene position: 4082193-4083110 (Clockwise)
Preceding gene: 34499234
Following gene: 34499241
Centisome position: 85.92
GC content: 71.13
Gene sequence:
>918_bases ATGCGTACTTTGCTCATCATCGGCGCCGGCGATGTCGCGCGGCGCGCCCTTCCGCTGCTGCTCCGGCATTGGCGGGTATT GGCCCTGTGCCGGACCGAAGCCTCCGCCGCCCGCTGGCGCGCGCTGGGCGCCGTGCCCCTGATCGGCGATCTCGACGACT CCGGCAGCCTGGAGCGGCTAGCCGGCCTGGCCGACGCCGCGCTGCTGACCGCCCCGCCCCCGGCCCATGGCCGGACAGAC CCGAGAATGCGCAAGTTGTTGTACGCGCTGGCAAAAGCCGACAGCATACCACAGCAATTGATCTACATCAGCACCAGCGG CGTGTACGGCGACGCCGGCGGCGGCCTGCTGGACGAAGCCGCGGCGATTCGTCCGCGCAACGAACGCGCGCAGCGCCGCG CCGACGCCGAAGCCCAGCTGCGCCGTTTCGCCTGCCGGCGCCGCTGCGCGCTGACCATACTGCGCGCGCCCGGCATCTAC GCCGACGAGAGGCTGCCGCTGTCGCGCTTTGCCAGCGGCGCGCCGCTGATCATCGACGCCGAGGACAGCTGGAGCAACCA CATCCATGCCGACGATCTGGCCCAGCTATGCGTAGCGGCCTTGCGCCGCCGGCGCGGCATCCGCGTCTACAACGCCTGCG ACGATAGGCCGATGCCGGTCGGCCAGTGGTACGCGGCGCTTGGGGAAACGCTTGGCCTGTCCATGCCGCCGCGGCTGCCT CGGGCGGAGGTCAAGGCTCGCGTCGCGCCGTCGCAATGGTCGTTCCTGGCCGAATCCCGCCGCCTGGACAACAGCAGGAT GCGGCGCGAGCTGGACGTCCGGCTGCGCTGGCCCAGCGTGCTCGACTACCTGGCCGCGCTGCGGCGGGACGAGGGCCGGC GGTCGGCAATACTCGCAAGCTACGCCGAGATTCGGTAA
Upstream 100 bases:
>100_bases TTTCATGCGCTTCGACACCGAATGTATGCCCGCTGGGGAGCACCTTCACCTGGCAAGTCATAATCGTTTCTCAATCCCGA ATTCTGGCTAAAATGCCACC
Downstream 100 bases:
>100_bases CATCGCGGTTTTTTTGAGTTTTCAGCAGGCCAGCAAAATGGAAAATCCGGCTTTCAAACGCGCGATCCGCAGCTTTGTGC TGCGCCAGGGCCATCTGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: Oxidoreductase Protein; Nucleoside-Diphosphate-Sugar Epimerase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Nucleoside-Diphosphate-Sugar Epimerases; NAD-Dependent Epimerase/Dehydratase Family Protein; Epimerase; NAD Dependent Epimerase/Dehydratase Family Protein
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERLAGLADAALLTAPPPAHGRTD PRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEAAAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIY ADERLPLSRFASGAPLIIDAEDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILASYAEIR
Sequences:
>Translated_305_residues MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERLAGLADAALLTAPPPAHGRTD PRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEAAAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIY ADERLPLSRFASGAPLIIDAEDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILASYAEIR >Mature_305_residues MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERLAGLADAALLTAPPPAHGRTD PRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEAAAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIY ADERLPLSRFASGAPLIIDAEDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILASYAEIR
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33865; Mature: 33865
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERL CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHH AGLADAALLTAPPPAHGRTDPRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEA HHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHH AAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIYADERLPLSRFASGAPLIIDA HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCCCCEEEEC EDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILAS HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHEEEECHHHHHHHHHHHHCCCHHHHHHHH YAEIR HHHCC >Mature Secondary Structure MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERL CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHH AGLADAALLTAPPPAHGRTDPRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEA HHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHH AAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIYADERLPLSRFASGAPLIIDA HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCCCCEEEEC EDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILAS HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHEEEECHHHHHHHHHHHHCCCHHHHHHHH YAEIR HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA