Definition Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession NC_005085
Length 4,751,080

Click here to switch to the map view.

The map label for this gene is 34499240

Identifier: 34499240

GI number: 34499240

Start: 4082193

End: 4083110

Strand: Direct

Name: 34499240

Synonym: CV_3785

Alternate gene names: NA

Gene position: 4082193-4083110 (Clockwise)

Preceding gene: 34499234

Following gene: 34499241

Centisome position: 85.92

GC content: 71.13

Gene sequence:

>918_bases
ATGCGTACTTTGCTCATCATCGGCGCCGGCGATGTCGCGCGGCGCGCCCTTCCGCTGCTGCTCCGGCATTGGCGGGTATT
GGCCCTGTGCCGGACCGAAGCCTCCGCCGCCCGCTGGCGCGCGCTGGGCGCCGTGCCCCTGATCGGCGATCTCGACGACT
CCGGCAGCCTGGAGCGGCTAGCCGGCCTGGCCGACGCCGCGCTGCTGACCGCCCCGCCCCCGGCCCATGGCCGGACAGAC
CCGAGAATGCGCAAGTTGTTGTACGCGCTGGCAAAAGCCGACAGCATACCACAGCAATTGATCTACATCAGCACCAGCGG
CGTGTACGGCGACGCCGGCGGCGGCCTGCTGGACGAAGCCGCGGCGATTCGTCCGCGCAACGAACGCGCGCAGCGCCGCG
CCGACGCCGAAGCCCAGCTGCGCCGTTTCGCCTGCCGGCGCCGCTGCGCGCTGACCATACTGCGCGCGCCCGGCATCTAC
GCCGACGAGAGGCTGCCGCTGTCGCGCTTTGCCAGCGGCGCGCCGCTGATCATCGACGCCGAGGACAGCTGGAGCAACCA
CATCCATGCCGACGATCTGGCCCAGCTATGCGTAGCGGCCTTGCGCCGCCGGCGCGGCATCCGCGTCTACAACGCCTGCG
ACGATAGGCCGATGCCGGTCGGCCAGTGGTACGCGGCGCTTGGGGAAACGCTTGGCCTGTCCATGCCGCCGCGGCTGCCT
CGGGCGGAGGTCAAGGCTCGCGTCGCGCCGTCGCAATGGTCGTTCCTGGCCGAATCCCGCCGCCTGGACAACAGCAGGAT
GCGGCGCGAGCTGGACGTCCGGCTGCGCTGGCCCAGCGTGCTCGACTACCTGGCCGCGCTGCGGCGGGACGAGGGCCGGC
GGTCGGCAATACTCGCAAGCTACGCCGAGATTCGGTAA

Upstream 100 bases:

>100_bases
TTTCATGCGCTTCGACACCGAATGTATGCCCGCTGGGGAGCACCTTCACCTGGCAAGTCATAATCGTTTCTCAATCCCGA
ATTCTGGCTAAAATGCCACC

Downstream 100 bases:

>100_bases
CATCGCGGTTTTTTTGAGTTTTCAGCAGGCCAGCAAAATGGAAAATCCGGCTTTCAAACGCGCGATCCGCAGCTTTGTGC
TGCGCCAGGGCCATCTGTCC

Product: hypothetical protein

Products: NA

Alternate protein names: Oxidoreductase Protein; Nucleoside-Diphosphate-Sugar Epimerase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Nucleoside-Diphosphate-Sugar Epimerases; NAD-Dependent Epimerase/Dehydratase Family Protein; Epimerase; NAD Dependent Epimerase/Dehydratase Family Protein

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERLAGLADAALLTAPPPAHGRTD
PRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEAAAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIY
ADERLPLSRFASGAPLIIDAEDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP
RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILASYAEIR

Sequences:

>Translated_305_residues
MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERLAGLADAALLTAPPPAHGRTD
PRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEAAAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIY
ADERLPLSRFASGAPLIIDAEDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP
RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILASYAEIR
>Mature_305_residues
MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERLAGLADAALLTAPPPAHGRTD
PRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEAAAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIY
ADERLPLSRFASGAPLIIDAEDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP
RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILASYAEIR

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33865; Mature: 33865

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERL
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHH
AGLADAALLTAPPPAHGRTDPRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEA
HHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHH
AAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIYADERLPLSRFASGAPLIIDA
HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCCCCEEEEC
EDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP
CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC
RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILAS
HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHEEEECHHHHHHHHHHHHCCCHHHHHHHH
YAEIR
HHHCC
>Mature Secondary Structure
MRTLLIIGAGDVARRALPLLLRHWRVLALCRTEASAARWRALGAVPLIGDLDDSGSLERL
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHH
AGLADAALLTAPPPAHGRTDPRMRKLLYALAKADSIPQQLIYISTSGVYGDAGGGLLDEA
HHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHH
AAIRPRNERAQRRADAEAQLRRFACRRRCALTILRAPGIYADERLPLSRFASGAPLIIDA
HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCCCCEEEEC
EDSWSNHIHADDLAQLCVAALRRRRGIRVYNACDDRPMPVGQWYAALGETLGLSMPPRLP
CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC
RAEVKARVAPSQWSFLAESRRLDNSRMRRELDVRLRWPSVLDYLAALRRDEGRRSAILAS
HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHEEEECHHHHHHHHHHHHCCCHHHHHHHH
YAEIR
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA