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The map label for this gene is ydaM [H]

Identifier: 34499192

GI number: 34499192

Start: 4035253

End: 4036401

Strand: Reverse

Name: ydaM [H]

Synonym: CV_3737

Alternate gene names: 34499192

Gene position: 4036401-4035253 (Counterclockwise)

Preceding gene: 34499193

Following gene: 34499189

Centisome position: 84.96

GC content: 65.27

Gene sequence:

>1149_bases
ATGCTCAGGCTGTCGATTTGGCAATCCTTCCTCACCATTCCCTTGTTCGTGCTGCTGATGCTGCCCCAGGTGCCGTGGGT
GAGGGGGCTGGCATGGGCGCTGCCTTTCCTGGCGATGCAGTTGTGGCTGCGCAAGTTGTGCGAGCGCTTCGGCAACGAGC
CATTGTCCTTGTGGCAGACCTGGCGCCGCTACCTGGCGCTGCGGGGGGTGATGCTGGCGAACAGCATGGCTTGGCCCGCC
ATCATGTGGCTGATGCTGCCAGACCAGGACGAGCCGTACCGGATGGTGACCCTGCTGTGGCTGGTGGGCGCCTCGGCGCT
GCTTTCCCTGCTGTTGGCGCCATGCCGGGACATGCTGCGCGCCCATTTGGTCGGATACTGGGCGTATCCCTTGTACCGGC
TTTACAGTGAGGGCGGCAGCCTGTACCTGGCCCTGATGGTGGGGTCCGCCATCTATATCCTGGTGCAATGGGAATTCCTG
CAGAGTTTTCACCGCCAGCTGCAGGATACCGCCAACCTGAGCGAGCGCAACGAGAGCATGCTGGCCTCGGTGCAGGCCCT
GCATCGGGAGAGCATGGGCAAAAAGGCCCTGCTGGAAAAGCGGCAGCAGGTGCTGCAGAGCGCGCTGCAGCAGATGAAAA
AGCTTGCGGAGAGCGATGCCCTGACCGGCTGCTACAACCAGCGGGCATTGCGCGAGAGGCTGGACCGCTGCGCCGAAGCC
AGCCTGGCCAGCGGACGTCCCTGGTCGCTGGCGATGCTGGATCTCGACCATTTCAAGCAGGTGAACGATACCTTCGGCCA
CCTGGCGGGGGACCGGCTGCTGTGTCAGACGGCCAGGCTGATCGAAAGCCGCTTGCCGGAAGGCTGCATTCTGGCGCGAT
ACGGCGGCGAGGAGTTCGCGGTGCTGGCGCCGGACCGGGACGGGCTGGAGCTGCTGAGCCTGATGGAGGAGGTGAGGACC
CTGCTTTCCACGTCCAGCCTGGAGGGGTTGCCGGTGGGACGGGTGCAGACGATGTCGGTGGGGGTGGTAGGCTGCCAGCC
GGGCGACCTGGTGCGGCAATGCCTGAAGCGGGCCGACGTGGCGCTGTACCGCGCCAAGCAGGGCGGGCGCAACCGGGTCT
GCCTGGCGTCTCCGATGGATGACATCTAG

Upstream 100 bases:

>100_bases
ATCGGGTCTGCTCCGAGAAGGACGCGATATGACGCGGATCGATCGCGAGCCTATCGTCTTCGGCCGGCAGGAGGCGGAGC
TGGCGCGGGAGATGGTGGGC

Downstream 100 bases:

>100_bases
GGTCTGGATCCGCGTTGACGGGCCTTAGCCCCTTTCCGCCGCGGGGGCGAGCATGGCTTTCAGCGCGCCGTGCTGGATGG
CCACGCCCAGGCAGGCGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLRLSIWQSFLTIPLFVLLMLPQVPWVRGLAWALPFLAMQLWLRKLCERFGNEPLSLWQTWRRYLALRGVMLANSMAWPA
IMWLMLPDQDEPYRMVTLLWLVGASALLSLLLAPCRDMLRAHLVGYWAYPLYRLYSEGGSLYLALMVGSAIYILVQWEFL
QSFHRQLQDTANLSERNESMLASVQALHRESMGKKALLEKRQQVLQSALQQMKKLAESDALTGCYNQRALRERLDRCAEA
SLASGRPWSLAMLDLDHFKQVNDTFGHLAGDRLLCQTARLIESRLPEGCILARYGGEEFAVLAPDRDGLELLSLMEEVRT
LLSTSSLEGLPVGRVQTMSVGVVGCQPGDLVRQCLKRADVALYRAKQGGRNRVCLASPMDDI

Sequences:

>Translated_382_residues
MLRLSIWQSFLTIPLFVLLMLPQVPWVRGLAWALPFLAMQLWLRKLCERFGNEPLSLWQTWRRYLALRGVMLANSMAWPA
IMWLMLPDQDEPYRMVTLLWLVGASALLSLLLAPCRDMLRAHLVGYWAYPLYRLYSEGGSLYLALMVGSAIYILVQWEFL
QSFHRQLQDTANLSERNESMLASVQALHRESMGKKALLEKRQQVLQSALQQMKKLAESDALTGCYNQRALRERLDRCAEA
SLASGRPWSLAMLDLDHFKQVNDTFGHLAGDRLLCQTARLIESRLPEGCILARYGGEEFAVLAPDRDGLELLSLMEEVRT
LLSTSSLEGLPVGRVQTMSVGVVGCQPGDLVRQCLKRADVALYRAKQGGRNRVCLASPMDDI
>Mature_382_residues
MLRLSIWQSFLTIPLFVLLMLPQVPWVRGLAWALPFLAMQLWLRKLCERFGNEPLSLWQTWRRYLALRGVMLANSMAWPA
IMWLMLPDQDEPYRMVTLLWLVGASALLSLLLAPCRDMLRAHLVGYWAYPLYRLYSEGGSLYLALMVGSAIYILVQWEFL
QSFHRQLQDTANLSERNESMLASVQALHRESMGKKALLEKRQQVLQSALQQMKKLAESDALTGCYNQRALRERLDRCAEA
SLASGRPWSLAMLDLDHFKQVNDTFGHLAGDRLLCQTARLIESRLPEGCILARYGGEEFAVLAPDRDGLELLSLMEEVRT
LLSTSSLEGLPVGRVQTMSVGVVGCQPGDLVRQCLKRADVALYRAKQGGRNRVCLASPMDDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=38.9221556886228, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=34.8837209302326, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=34.1040462427746, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=39.8843930635838, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=34.3023255813954, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=32.5966850828729, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=32.9479768786127, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI145693134, Length=231, Percent_Identity=28.1385281385281, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=206, Percent_Identity=28.1553398058252, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=30.5389221556886, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=26.9938650306748, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=28.3236994219653, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 43330; Mature: 43330

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLSIWQSFLTIPLFVLLMLPQVPWVRGLAWALPFLAMQLWLRKLCERFGNEPLSLWQT
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
WRRYLALRGVMLANSMAWPAIMWLMLPDQDEPYRMVTLLWLVGASALLSLLLAPCRDMLR
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHLVGYWAYPLYRLYSEGGSLYLALMVGSAIYILVQWEFLQSFHRQLQDTANLSERNESM
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LASVQALHRESMGKKALLEKRQQVLQSALQQMKKLAESDALTGCYNQRALRERLDRCAEA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLASGRPWSLAMLDLDHFKQVNDTFGHLAGDRLLCQTARLIESRLPEGCILARYGGEEFA
HCCCCCCCEEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCEEE
VLAPDRDGLELLSLMEEVRTLLSTSSLEGLPVGRVQTMSVGVVGCQPGDLVRQCLKRADV
EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
ALYRAKQGGRNRVCLASPMDDI
HHHHHHCCCCCCEEECCCCCCC
>Mature Secondary Structure
MLRLSIWQSFLTIPLFVLLMLPQVPWVRGLAWALPFLAMQLWLRKLCERFGNEPLSLWQT
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
WRRYLALRGVMLANSMAWPAIMWLMLPDQDEPYRMVTLLWLVGASALLSLLLAPCRDMLR
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHLVGYWAYPLYRLYSEGGSLYLALMVGSAIYILVQWEFLQSFHRQLQDTANLSERNESM
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LASVQALHRESMGKKALLEKRQQVLQSALQQMKKLAESDALTGCYNQRALRERLDRCAEA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLASGRPWSLAMLDLDHFKQVNDTFGHLAGDRLLCQTARLIESRLPEGCILARYGGEEFA
HCCCCCCCEEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCEEE
VLAPDRDGLELLSLMEEVRTLLSTSSLEGLPVGRVQTMSVGVVGCQPGDLVRQCLKRADV
EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
ALYRAKQGGRNRVCLASPMDDI
HHHHHHCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]