Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 34499136

GI number: 34499136

Start: 3982053

End: 3983057

Strand: Direct

Name: nlpD [C]

Synonym: CV_3681

Alternate gene names: 34499136

Gene position: 3982053-3983057 (Clockwise)

Preceding gene: 34499135

Following gene: 34499137

Centisome position: 83.81

GC content: 64.18

Gene sequence:

>1005_bases
ATGGTGCAACAGGCCGCGCCGGTGGAAAGCGCCGCGCCGGCGCGCGTCGCCCAGCCGGCGACCGCCAAGGCTGAAACGCC
GCCCGCCTCGCATGACGCAACCGTGGCCGCCCCCTATCACGACCAGGGCAGTCTGAAAGTCCAGCCCGTGGCGGATGACG
CGGCAGCGGAAAACGGCAACACTTACGTGGTGAAACCCGGCGACAACCTGTTCCGGATTTCGCTGAACCATGGGCTGAAA
TACAAGGACGTGGCGGCCTGGAACAATCTGCCCGACAACAACATCAAGGTCGGCCAGGTGCTGCGGCTGACGCCTCCGGG
CGGCGCCGCCAACGCGGCGGCAGCCGCGACGGACAAGCCTGCGGCCGCGCCGATCGTGGCGGCGAACGAGGCAGGCAAGA
ATGTCGGCGGCTCCAGCGTCAAGGCTTATCCGAAGGCGCTGAAGCAACCGTACAGCAGTGAAGCGGTGAAGAACCTGCCG
GCCCTGAGCGAGGGACGCGCAGCCGGCAACAACAACGCTCAAACATCCGCTCCCGCGGTCGTCCCGCCTCCGGCGAAGAA
ACCGGAAGCCAGCGCGGTCACGCAAGCCCCCGCGCCGGCCAAGGAAGCCAGCGCCCCCAGCGCCAAGCAGGAGGAAGACG
CTGTGGCCTGGGCCTGGCCTACCGAAGGCAAAATGACCAAGGGGTATTCGGATAGCAACAAGGGCATCGAAATCAGCGGC
CGGATGGGCCAGCCGGTGCTCGCGGCCGGAGACGGCAAGGTGGTGTACAGCGGCGCGGGACTGAGGGGTTACGGCAAGCT
GATCATCATCAAACATAACAAGACCTTCCTGTCCGCATACGCGCACAACAGCCAACTGCTGGTCAAGGAAGGACAGACTG
TCAAGAAAGGGCAGAAGATTGCCGAAATGGGCAATACCGATGCCGACCAAGTCAAGCTGCATTTCGAGATCCGCCGCTAC
GGCAAGCCGGTGGATCCGATGCAGTATCTTGAACACAAGTCCTGA

Upstream 100 bases:

>100_bases
TATTCAACGTTTGAACAAAAAAAACATGCTAAAAATGCATTGCAGGTATGCACATATATTAGTCGCCGCGGCGGTAGCGG
GTTTGGCCGGCTGCAGCAGC

Downstream 100 bases:

>100_bases
CCGGGCGTAGCCAGCTACTCCCGCCGGGACAAGACAGCGACGGGGGTAGAGAGATGAGTAACGAAATAGACATCCTGGAC
GAGGATGACATCCTCGACGA

Product: lipoprotein nlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MVQQAAPVESAAPARVAQPATAKAETPPASHDATVAAPYHDQGSLKVQPVADDAAAENGNTYVVKPGDNLFRISLNHGLK
YKDVAAWNNLPDNNIKVGQVLRLTPPGGAANAAAAATDKPAAAPIVAANEAGKNVGGSSVKAYPKALKQPYSSEAVKNLP
ALSEGRAAGNNNAQTSAPAVVPPPAKKPEASAVTQAPAPAKEASAPSAKQEEDAVAWAWPTEGKMTKGYSDSNKGIEISG
RMGQPVLAAGDGKVVYSGAGLRGYGKLIIIKHNKTFLSAYAHNSQLLVKEGQTVKKGQKIAEMGNTDADQVKLHFEIRRY
GKPVDPMQYLEHKS

Sequences:

>Translated_334_residues
MVQQAAPVESAAPARVAQPATAKAETPPASHDATVAAPYHDQGSLKVQPVADDAAAENGNTYVVKPGDNLFRISLNHGLK
YKDVAAWNNLPDNNIKVGQVLRLTPPGGAANAAAAATDKPAAAPIVAANEAGKNVGGSSVKAYPKALKQPYSSEAVKNLP
ALSEGRAAGNNNAQTSAPAVVPPPAKKPEASAVTQAPAPAKEASAPSAKQEEDAVAWAWPTEGKMTKGYSDSNKGIEISG
RMGQPVLAAGDGKVVYSGAGLRGYGKLIIIKHNKTFLSAYAHNSQLLVKEGQTVKKGQKIAEMGNTDADQVKLHFEIRRY
GKPVDPMQYLEHKS
>Mature_334_residues
MVQQAAPVESAAPARVAQPATAKAETPPASHDATVAAPYHDQGSLKVQPVADDAAAENGNTYVVKPGDNLFRISLNHGLK
YKDVAAWNNLPDNNIKVGQVLRLTPPGGAANAAAAATDKPAAAPIVAANEAGKNVGGSSVKAYPKALKQPYSSEAVKNLP
ALSEGRAAGNNNAQTSAPAVVPPPAKKPEASAVTQAPAPAKEASAPSAKQEEDAVAWAWPTEGKMTKGYSDSNKGIEISG
RMGQPVLAAGDGKVVYSGAGLRGYGKLIIIKHNKTFLSAYAHNSQLLVKEGQTVKKGQKIAEMGNTDADQVKLHFEIRRY
GKPVDPMQYLEHKS

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=279, Percent_Identity=37.6344086021505, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI87082174, Length=118, Percent_Identity=55.9322033898305, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=34.453781512605, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 34745; Mature: 34745

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQQAAPVESAAPARVAQPATAKAETPPASHDATVAAPYHDQGSLKVQPVADDAAAENGN
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCHHCCCCC
TYVVKPGDNLFRISLNHGLKYKDVAAWNNLPDNNIKVGQVLRLTPPGGAANAAAAATDKP
EEEECCCCCEEEEEECCCCCEEEEHHCCCCCCCCEEECEEEEECCCCCCCCCCCCCCCCC
AAAPIVAANEAGKNVGGSSVKAYPKALKQPYSSEAVKNLPALSEGRAAGNNNAQTSAPAV
CCCCEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
VPPPAKKPEASAVTQAPAPAKEASAPSAKQEEDAVAWAWPTEGKMTKGYSDSNKGIEISG
CCCCCCCCCCCHHCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCEEEEC
RMGQPVLAAGDGKVVYSGAGLRGYGKLIIIKHNKTFLSAYAHNSQLLVKEGQTVKKGQKI
CCCCCEEEECCCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCHHHHHHH
AEMGNTDADQVKLHFEIRRYGKPVDPMQYLEHKS
HHHCCCCHHHEEEEEEEECCCCCCCHHHHHHCCC
>Mature Secondary Structure
MVQQAAPVESAAPARVAQPATAKAETPPASHDATVAAPYHDQGSLKVQPVADDAAAENGN
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCHHCCCCC
TYVVKPGDNLFRISLNHGLKYKDVAAWNNLPDNNIKVGQVLRLTPPGGAANAAAAATDKP
EEEECCCCCEEEEEECCCCCEEEEHHCCCCCCCCEEECEEEEECCCCCCCCCCCCCCCCC
AAAPIVAANEAGKNVGGSSVKAYPKALKQPYSSEAVKNLPALSEGRAAGNNNAQTSAPAV
CCCCEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
VPPPAKKPEASAVTQAPAPAKEASAPSAKQEEDAVAWAWPTEGKMTKGYSDSNKGIEISG
CCCCCCCCCCCHHCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCEEEEC
RMGQPVLAAGDGKVVYSGAGLRGYGKLIIIKHNKTFLSAYAHNSQLLVKEGQTVKKGQKI
CCCCCEEEECCCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCHHHHHHH
AEMGNTDADQVKLHFEIRRYGKPVDPMQYLEHKS
HHHCCCCHHHEEEEEEEECCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]