Click here to switch to the map view.

The map label for this gene is cioB [H]

Identifier: 34499112

GI number: 34499112

Start: 3956425

End: 3957435

Strand: Reverse

Name: cioB [H]

Synonym: CV_3657

Alternate gene names: 34499112

Gene position: 3957435-3956425 (Counterclockwise)

Preceding gene: 34499113

Following gene: 34499111

Centisome position: 83.3

GC content: 68.15

Gene sequence:

>1011_bases
ATGAGCGAGGCTTACTACCTGCCGGCGGTGTTCGCCGGACTGATGGCGCTGGCGATGCTGGTGTATGTGGTGCTGGACGG
CTTCGACCTCGGCGTCGGCATCCTGCTGCCGCTGGCCAGCGACGAGGAAAAGGATCTGATGATCGCATCCATCGGTCCGT
TCTGGGACGCCAACGAAACCTGGCTGGTGCTGGGCGCGGGCCTGCTGCTGGTGGCTTTCCCGCTGGCGCACGGCGTGGTG
TTCGGCGCGCTGTACCTGCCGGTGCTGGCGATGCTGGTGGGGCTGATCCTGCGCGGCGTGGCCTTCGACTTCCGCGTCAA
GGCGCAGGACCCGCACAAACCGTGGTGGAACGCGGCCTTCGCCGGCGGCTCGATGCTGGCGGCGCTGGCCCAGGGCGTGA
TGCTGGGCCGCTATCTGACCGGCTTCGCCGACACCTCCACTTCCTGGCTGTTCTCGTTGGTGGTGGGCATCGGCCTGGCG
CTGGCCTACGCGCTGCTCGGCGCCTGCTGGCTGGTGATGAAGGCTCATGGCGGCTTGCAGGCCAAGGCGATACGTTGGGC
GCAGCTGAGCCTGTACGGCGCCGGCACCGCGGTGGTGGCGGTGTCGCTGGTGACGCCGCTGGCCAATCCGGCCATCGCCG
CCAAGTGGTTCGCGCTGCCGCAATTCCTGCTGTTGCTGCCGCTGCCGCTGGGCACGCTGGCGCTGTTCGTGCTGCTGATC
GCCTGCCTGCCCAGGCTGGCCCGCCGCCAGGCCGCCGGCAACGACAGCTTCTGCTGGCTGCCGTTCGCCGCCAGCGTCGG
CATCGTGCTGCTGTCGTTCTGGGGACTGACTTACAGCGTGTTTCCGGAGGTGGTGCTGGGCCGGATGACCATCTGGCAGG
CGGCGGCTGACCCGGAAGCGCTGTGGGTGATACTGTGGGGCGCCATCGTGGTGCTGCCCTGCATCATCGGCTACACCGCT
TTCGCCTACCGGGTGTTCTGGGGCAAGGCCGACAAGCTCAGCTACCAGTAG

Upstream 100 bases:

>100_bases
CGCTGCTGCTGCTGGCTTACGTCTCGGTGCTGTTCCACCTGGCGCGCAAGGCCGGCTCGCATGAACTGGCCGCCAACGCC
CAACTGAAGGAGAAACTGGC

Downstream 100 bases:

>100_bases
AGCGGGGCAAAAAACAAAAAAGCGCGCCGGCATGGCGCGCTTTTTTTGCGTCTTCATTCCATTTTTGCGTCTTGATGCAA
ATTTAATGTCATATTATCGT

Product: cytochrome bd-I oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSEAYYLPAVFAGLMALAMLVYVVLDGFDLGVGILLPLASDEEKDLMIASIGPFWDANETWLVLGAGLLLVAFPLAHGVV
FGALYLPVLAMLVGLILRGVAFDFRVKAQDPHKPWWNAAFAGGSMLAALAQGVMLGRYLTGFADTSTSWLFSLVVGIGLA
LAYALLGACWLVMKAHGGLQAKAIRWAQLSLYGAGTAVVAVSLVTPLANPAIAAKWFALPQFLLLLPLPLGTLALFVLLI
ACLPRLARRQAAGNDSFCWLPFAASVGIVLLSFWGLTYSVFPEVVLGRMTIWQAAADPEALWVILWGAIVVLPCIIGYTA
FAYRVFWGKADKLSYQ

Sequences:

>Translated_336_residues
MSEAYYLPAVFAGLMALAMLVYVVLDGFDLGVGILLPLASDEEKDLMIASIGPFWDANETWLVLGAGLLLVAFPLAHGVV
FGALYLPVLAMLVGLILRGVAFDFRVKAQDPHKPWWNAAFAGGSMLAALAQGVMLGRYLTGFADTSTSWLFSLVVGIGLA
LAYALLGACWLVMKAHGGLQAKAIRWAQLSLYGAGTAVVAVSLVTPLANPAIAAKWFALPQFLLLLPLPLGTLALFVLLI
ACLPRLARRQAAGNDSFCWLPFAASVGIVLLSFWGLTYSVFPEVVLGRMTIWQAAADPEALWVILWGAIVVLPCIIGYTA
FAYRVFWGKADKLSYQ
>Mature_335_residues
SEAYYLPAVFAGLMALAMLVYVVLDGFDLGVGILLPLASDEEKDLMIASIGPFWDANETWLVLGAGLLLVAFPLAHGVVF
GALYLPVLAMLVGLILRGVAFDFRVKAQDPHKPWWNAAFAGGSMLAALAQGVMLGRYLTGFADTSTSWLFSLVVGIGLAL
AYALLGACWLVMKAHGGLQAKAIRWAQLSLYGAGTAVVAVSLVTPLANPAIAAKWFALPQFLLLLPLPLGTLALFVLLIA
CLPRLARRQAAGNDSFCWLPFAASVGIVLLSFWGLTYSVFPEVVLGRMTIWQAAADPEALWVILWGAIVVLPCIIGYTAF
AYRVFWGKADKLSYQ

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=26.775956284153, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787213, Length=188, Percent_Identity=30.8510638297872, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36038; Mature: 35907

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAYYLPAVFAGLMALAMLVYVVLDGFDLGVGILLPLASDEEKDLMIASIGPFWDANET
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCEEEEECCCCCCCCCC
WLVLGAGLLLVAFPLAHGVVFGALYLPVLAMLVGLILRGVAFDFRVKAQDPHKPWWNAAF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHH
AGGSMLAALAQGVMLGRYLTGFADTSTSWLFSLVVGIGLALAYALLGACWLVMKAHGGLQ
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AKAIRWAQLSLYGAGTAVVAVSLVTPLANPAIAAKWFALPQFLLLLPLPLGTLALFVLLI
HHHHHHHHEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ACLPRLARRQAAGNDSFCWLPFAASVGIVLLSFWGLTYSVFPEVVLGRMTIWQAAADPEA
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LWVILWGAIVVLPCIIGYTAFAYRVFWGKADKLSYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEAYYLPAVFAGLMALAMLVYVVLDGFDLGVGILLPLASDEEKDLMIASIGPFWDANET
CCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCEEEEECCCCCCCCCC
WLVLGAGLLLVAFPLAHGVVFGALYLPVLAMLVGLILRGVAFDFRVKAQDPHKPWWNAAF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHH
AGGSMLAALAQGVMLGRYLTGFADTSTSWLFSLVVGIGLALAYALLGACWLVMKAHGGLQ
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AKAIRWAQLSLYGAGTAVVAVSLVTPLANPAIAAKWFALPQFLLLLPLPLGTLALFVLLI
HHHHHHHHEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ACLPRLARRQAAGNDSFCWLPFAASVGIVLLSFWGLTYSVFPEVVLGRMTIWQAAADPEA
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LWVILWGAIVVLPCIIGYTAFAYRVFWGKADKLSYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]